Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27980 761 / 0 DPL1, ATDPL1 dihydrosphingosine phosphate lyase (.1) AT3G17760 86 / 1e-17 GAD5 glutamate decarboxylase 5 (.1.2) AT5G17330 83 / 1e-16 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT1G65960 81 / 5e-16 GAD2 glutamate decarboxylase 2 (.1.2) AT2G02010 77 / 7e-15 GAD4 glutamate decarboxylase 4 (.1) AT2G02000 76 / 2e-14 GAD3 glutamate decarboxylase 3 (.1) AT2G20340 44 / 0.0003 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 42 / 0.0009 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011345 [exp] 986 / 0 AT1G27980 794 / 0.0 dihydrosphingosine phosphate lyase (.1) Lus10035096 [exp] 80 / 1e-15 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10019136 [exp] 77 / 8e-15 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10028530 [exp] 77 / 9e-15 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10034425 [exp] 60 / 2e-09 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10022856 [exp] 45 / 0.0001 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10011590 [exp] 43 / 0.0006 AT5G65720 748 / 0.0 NITROGEN FIXATION S HOMOLOG 1, ARABIDOPSIS THALIANA NITROGEN FIXATION S \(NIFS\)-LIKE 1, nitrogen fixation S (NIFS)-like 1 (.1), nitrogen fixation S (NIFS)-like 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168800 [exp] 810 / 0 AT1G27980 796 / 0.0 dihydrosphingosine phosphate lyase (.1) Potri.001G059001 [exp] 119 / 2e-32 AT1G27980 127 / 5e-36 dihydrosphingosine phosphate lyase (.1) Potri.004G075300 [exp] 81 / 8e-16 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 79 / 3e-15 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.012G039000 [exp] 77 / 1e-14 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.010G100500 [exp] 76 / 2e-14 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.017G144421 [exp] 74 / 8e-14 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.008G141100 [exp] 73 / 2e-13 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.002G255600 [exp] 42 / 0.0008 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10003129 pacid=23169989 polypeptide=Lus10003129 locus=Lus10003129.g ID=Lus10003129.BGIv1.0 annot-version=v1.0 ATGGATATCGAATTAGTGAAGTCGTCGCTGGTTCGTCTCAGAGGTTCCGCCAATTCATTTCTGTCGGAGTACGAGCCGCTGACTCTGGTTCTAGCTCCTC TACTTACACTCGTGATTGCTCGTGCTGTTCGTTCGCTGCTTCGTAGCGTGCAGGATAATGGAGTCAAAGCTATGGTCGTCGGGTTCGTCATGAGCTCGAT CAAGTTGGTGCCAGGAGTCAAGAGTTATATCGATGCCGAGAAACAGAAGGTAGTTGACAAGATGCAGTCTGGTACCAAATCCAAACGAGAAGGGTGGTTG ACAGAGTTGCCTAAAGAAGGCCTGGGGCCGCAAGTCATTGAAAAACTGAAAGAAGAGAAAGATAAGGATGTGGATTGGCGGGGAAAATGCTCTGGTACAG TTTACATTGGTGGAGCTGAATCGGAGGGCCATTTTGCTGTGATAAATGAGGCCTGTTCAATGTTTGCACATACAAATCCATTGCACTTGGATGTGTTCCC AAGTGTCGCTCGATTCGAGGCAGAAGTTGTGGCAATGACGGCTGCCCTGCTTGGAAGTCAAGAAAAAGCTTCTGGAGGAGAGGTATGTGGGAACATGACA TCAGGTGGAACGGAAAGTATTTTGCTGGCTATGAAAACATCTCGAGACTACATGAAGACTAAGAAGGGAATTACAAATCCTGAAATGATAATACCTGTAT CAGCTCACTCAGCTTATGACAAGGCTGCACAATATTTTAACATCAAGCTCCGGCGGGTTCCTGTAAATAAAGATTTTCAAGCGGATGTTAAAGCTATAAG AAGGCACATTAACCGGAACACAATTTTGATTGTTGGTTCTGCCCCTGGGTTTCCTCATGGTGTCATTGATCCCATTGAGGAGCTTGGACAATTAGCTTCT AGCCATGGAATATGTCTGCATGTTGACCTTTGCCTTGGAGGATTTGTGCTACCTTTTGCCCGTATGCTTGGGTACCCAATTCCACCTTTCGACTTTACCG TTGCAGGGGTGACATCAGTATCAGTGGATGTACACAACTTTCGGAAACCATTGAATGCTGATATGGGTTCTCTTGGCATGGCTTCATTCTGCTGGCTATC CACTTTGCCCCATATTGGTTCTTTGCAACAGCATCAATTTGTTGCTGTTACAGAATGGTCAGGTGGCCTCTATGTGTCTCCTACCATTGCTGGCAGCAGG CCAGGGAGTTTGATTGCTGGAGCTTGGGCAGCAATGATTTCTCTTGGGCGGCAAGGCTACTTGCAGCACACTAAGGCCATAATGGAGGTATCAAAGCAAC TACAGAATGGGTTGAAAGACATCCCTGACCTATTTATCATCGGAAAACCAGACATGACGATTGTCGCATTTGGATCCGACGTCGTGGATATATTCGAAGT CAATGACATCATGTCGTCAAAAGGCTGGCATCTTAACGCATTGCAGAGACCCAACAGTCTCCATATCTGCCTCACACTCCAACACGTATCGATTTACGAG GACTTCCTTGCTGATTTGATAGAATCAGTAACAACGGTGAAGGCGAATCCGGGTCCGGTAAAAGGAGGGATGGCTCCAATCTACGGTGCTGCTGGGAAGA TGCCAGATAGAGGAATGGTTCAGGATTTGCTAGTTGATTATATGGATAGTACATGCTAG
AA sequence Show only first row Show all	>Lus10003129 pacid=23169989 polypeptide=Lus10003129 locus=Lus10003129.g ID=Lus10003129.BGIv1.0 annot-version=v1.0 MDIELVKSSLVRLRGSANSFLSEYEPLTLVLAPLLTLVIARAVRSLLRSVQDNGVKAMVVGFVMSSIKLVPGVKSYIDAEKQKVVDKMQSGTKSKREGWL TELPKEGLGPQVIEKLKEEKDKDVDWRGKCSGTVYIGGAESEGHFAVINEACSMFAHTNPLHLDVFPSVARFEAEVVAMTAALLGSQEKASGGEVCGNMT SGGTESILLAMKTSRDYMKTKKGITNPEMIIPVSAHSAYDKAAQYFNIKLRRVPVNKDFQADVKAIRRHINRNTILIVGSAPGFPHGVIDPIEELGQLAS SHGICLHVDLCLGGFVLPFARMLGYPIPPFDFTVAGVTSVSVDVHNFRKPLNADMGSLGMASFCWLSTLPHIGSLQQHQFVAVTEWSGGLYVSPTIAGSR PGSLIAGAWAAMISLGRQGYLQHTKAIMEVSKQLQNGLKDIPDLFIIGKPDMTIVAFGSDVVDIFEVNDIMSSKGWHLNALQRPNSLHICLTLQHVSIYE DFLADLIESVTTVKANPGPVKGGMAPIYGAAGKMPDRGMVQDLLVDYMDSTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10003129 [exp]	0	1
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10008658 [exp]	1.4	0.9294
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025220 [exp]	2.4	0.9287
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	4.5	0.9278
AT5G24870			RING/U-box superfamily protein...		Lus10026941 [exp]	5.5	0.9309
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	5.9	0.9220
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	8.3	0.8959
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	9.0	0.9144
AT3G51630		ATWNK5, ZIK1, W...	with no lysine (K) kinase 5 (....		Lus10022747 [exp]	9.6	0.8719
AT1G54610			Protein kinase superfamily pro...		Lus10004144 [exp]	10.0	0.8998
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	10.1	0.9053

Compare expression of checked genes

Lus10003129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.