Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65440 1837 / 0 GTB1 global transcription factor group B1 (.1.2.3) AT1G63210 1488 / 0 Transcription elongation factor Spt6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011344 [exp] 2616 / 0 AT1G65440 1946 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029079 [exp] 1733 / 0 AT1G65440 1451 / 0.0 global transcription factor group B1 (.1.2.3) Lus10029085 [exp] 846 / 0 AT1G65440 761 / 0.0 global transcription factor group B1 (.1.2.3) Lus10034231 [exp] 456 / 3e-143 AT1G65440 426 / 2e-133 global transcription factor group B1 (.1.2.3) Lus10029034 [exp] 438 / 1e-141 AT1G65440 404 / 2e-130 global transcription factor group B1 (.1.2.3) Lus10013071 [exp] 302 / 1e-87 AT1G65440 275 / 7e-79 global transcription factor group B1 (.1.2.3) Lus10029078 [exp] 158 / 2e-44 AT1G65440 150 / 5e-43 global transcription factor group B1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029200 [exp] 2003 / 0 AT1G65440 1961 / 0.0 global transcription factor group B1 (.1.2.3) Potri.006G031900 [exp] 2001 / 0 AT1G65440 1982 / 0.0 global transcription factor group B1 (.1.2.3) Potri.001G034300 [exp] 1245 / 0 AT1G65440 1251 / 0.0 global transcription factor group B1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003130 pacid=23169990 polypeptide=Lus10003130 locus=Lus10003130.g ID=Lus10003130.BGIv1.0 annot-version=v1.0 ATGCCTAGAAATGTTATCTCCGACGAAGAAGACGAGATGGAGTTCGATGACGAGGACAGGGAGCCGGAGCAAGGAGGTGCTGGCGATGATGACGAGGATG AAGATGAAGAAGGGCAGGACGAGTATGAAAAGGATGATTTTATAGTGGACGATGTTGAAGAAGAGCCTGACGAAGAAGAAGAGAGGGCGGACAGTGATGA GGAAAGGCAACGGAAGAAGAAGAAGAAGAAGAAACGAGAGGCTGAGGTTCTCGATGATGAAGACTACGAGCTTCTATTGGATAATAATGCCATACAACGA AGACCACCAAAGGATAGCAAAAAGTTTAAAAGGCTTAAAAAGGCTCAACGGGATACAGATGGTGACGGGAATGAGTTCTCAGACGAGGAGTTTGATGGAA GTGGTAAGGGTGGACGGACTGCTGAGGAAAAAATTAAGCGCAGCTTATTCGGTGATTATGAAGGAAACAATCTAGAGGATATTGCTGAAGAAGAGGAACA AATAGAAGAGGAAGAAGATGTTGAAGTCGGGGAAGAGGATGAGATGGCTGATTTCATCGTTGATGAAGAAGAAATCGACGAGAATGGGCTTCCCGTTAGG CGTAAGAAGATAAAGAGAAAGAAATTAAGGCAAGCATTTGGTGCTTCCTCTTCTGCTTTGCAGGAAGCTCATGAGATATTTGGAGATGTGGATGAGCTCT TAGAGCTGCGTAAGCAACAAGGGAAAGATTCTGCTGAACAGCAGGAAAGGCGATTGGAAGATGAATTCGAGCCGACGGTACTTGCTGAGAAATACATGAC TGAGAAAGATGATGTGATTCGACAAACCGACATTCCCGAAAGGATGCAGATATTAGAGGAGACTACTGGCCCGCCAACAGTTAATGCAGACAGTTTAGAC GGTGAAAGCACGTGGATTTATAATCAGCTAGCAAGTGGTGTTGCGTCTATACAAGGTCTTGCTGCGTCTCTACAGGATCTGGCCAGCAATAAGGATGCGG TCGAGCGGTTTAAGGATGAGATTAGCCGTTTTTTGGATTTTCACCACGTGCAAAAGTTGGATATCCCATTCATTGCCACATACCGGAAAGATGAGTGCTC TAGCCTTTTCAAAGATCCTGAGCAACTCAAGTCCGATTACGACATTCACGATGACAATGACCGATCGCCAAAATTGAAGTGGCATAAGGTGGTTTCGGCA ATTCAGGACTTGGATAGGAAGTGGCTACTTCTCCAAAAGAGGAAGACTGCTCTCCGCTTGTACTACCGCAAGCGATATGACGAAGAATCTATGCGGATTT ATGACGAGACGAGACTTAATTTGAACCGGCACCTTTTCAAGTCCATTATTAAGTCGCTTGAGGCTGCCGAATCAGAACGAGAAGTTGATGATGTTGATGC AAAGTTTAACTTGCACTTCCCGCCTGGTGAGGTGGGTGCCAATGAAGGACAATATAAGAGACCAAAAAGGAAATCTACATATAGTACCTGCAACAAGGCT GGTCTATGGGAAGTTGCCAATAAGTTTGGTCGTAGTGCTGAGCAGCTCGGACGGCACTTGTCACTGTTGGAGATGGGTGTTGATTTGGAGGATGCCAAGG AAGCACCTGAAGAGATGGCTTCGAACTTTACATGTGCAATGTTTGAAACTCCAGACGCTGTTCTTAAAGGTGCCAGGCACATGGCTGCCGTCGAGATAAG TTGCGAGCCATACGTCAGGAAACATGTCCGTGCTGCTTACATGGAGAATGCAGTCGTATCCACCAGTCCAACTTCCGACGGAAACTCAACAATAGATTCA TTCCACCAGTTTTACGGGGTGAAATGGCTGCGTGAAAAACCAGTCAGCGAGTTCAAGGACGGACAATGGCTTCTCATCCAAAAGGCCGAAGAGGAGAAGC TTCTTCAAGTCACCTTCAAGCTTCCGGAAAAACGTATGGACGAATTAGTCACCGAATGCAAAGATCATTATCTTAGTGACGGTGTAAGTAAATCCGCCCA GTTATGGAACGAGCAAAGGCAGCTAATCTTGCAAGACGCTCTCTTCGGGTTTCTTATGCCTTCTATGGAGAAAGAAGCGAGATCGTTGCTTACAAGTAGA GCCAAACGGTGGCTACTATGGGAATACGGGCAAGTCTTGTGGAATAAAGTATCGGTCGGCCCGTATCAGAGGAAAGAAAATGACCGGTCTTCAGATGATG AAGCTGCACCGAGGGTCATGGCTTGCTGTTGGGGCCCCGGAAAACCTGCAACGACGTTTGTTATGTTGGATTCGGCTGGGGAGGTGCTGGACGTGCTTTA TACGGGTTCGCTTACGTTACGTTCTCAAAATGTTGATGACCAGCAAAGGAAGAAAAATGATCAGCAGCGAGTTTTGAAGTTTATGATGGATCATCAACCG CATGTGGTCGCTCTAGGGGCTGTCAATTTGTCTTGTACAAAACTGAAGGAAGACATCTATGAGATCATTTTTAAGATGGTGGAAGAAAATCCCAGAGATG TTGGACACGATATGGACGAATTAAGCATTTTGTACGGGGATGAGTCTCTTCCACGCCTTTACGAGAATTCCCGAATTTCGTCTGATCAACTACCTTCACA ATCAGGGATCGTTAAAAAGGCCGTTGCTCTCGGACGCTATCTTCAAAACCCATTGGCAATGGCGGCAACTCTCTGTGGACCTGAAAGAGAGATCCTATCT TGGAAGCTAAACCCTTTAGAGAGCTTTCTCACATCTGACGAAAAGTACGCAATGGTCGAACAGGTTATGGTGGACGTCACAAACCAGGTCGGGTTCGACG TGAACCTGGCAATAGGTCACGAATGGTTATTCGCTCCGCTGCAGTTTATATCCGGTCTCGGACCGAGGAAAGCAGCTTCTCTGCAGAGATCCCTCGTAAG AGCCGGTGGGATTTACACGAGGAAAGACTTTGTTACGATCCACGACCTAGGCAAAAAGGTGTTCGTCAATGCGGTCGGTTTTTTGCGAGTTCGACGGAGC GGCCTGGCAGCTAGCAGCAGTCAGTTTATTGATTTGTTGGACGACACGAGGATTCACCCAGAATCGTACGGGCTCGCTCAGGATTTGGCCAAAGATATGT ACGAACTCGATAATGTTGATGCAAATGATGATGACGATCTCGAAATGGCAATCGAGCATGTTCGGGACCACCCTTCGAGGTTGAGAAACCTGACTATTGA TCAGTATCTTCTTGACAAGGGCATGCTGAATAAAACGGAGACGTTGAAGGATATAAGACGGGAATTGATACACGGTTTCCAGGATTGGCGGAAACCGTAT AAAGAGCCGAGCCAGGAGGAAGAGTTTTACATGATTTCAGGCGAGACGGAAGATACAGTTGCAGAGGGTAGAATCGTCCAAGCCACTGTCCGGAGGGTAG TGAATGGTTCGAAAGCGATATGTTCTCTTGAATCTGGATTGACGGGGATACTTATGAAGGAAGATTATGGTGATGACTCGAGGGATAATTCAGAGTTGTC GGATAGGCTCCGTGAAGGTGATATACTCACGTGCAGGATAAAATCTGTTCAGATGAACAGATACCAGGCTTACATATCTTGTAAGGAGAGTGAGATGAGG AATAATAACCGGTACCAGCCCGTTCGAGATCTCGACCCTTATTACCATGAAGATACAGTCAGCTTGCAGAGTGACCAGGAGAAGGCTCGTAAAGAGAAGG ACCTTGCGAAGAAGCATTTCAAACCAAGGATGATCGTGCATCCTCAGTTCCAGAATATTACTTCGGATGAAGCTATGGAGTATTTGGCTGATATGGAGCC TGGGGCAAGCATTATTCGTCCAAGTTCTCGTGGCCCCTCATTTCTGACTCTTACTCTGAAAGTCTACAATGGAGTTTATGCCCACAAAGACATAGTTGAA GGGGGTAAAGAGCACAAGGACATCACGAGCCTTCTACGTATCGGGAAGACACTGAAAATCGGGGAGGACACTTTCGAGGATTTGGACGAGGTAATCGATA GGTATGTCGATCCTCTTGTGGTCCACCTGAAAACTATGCTGAACTACCGAAAGTTCCGAAGGGGAACAAAGGCGGAAGTGGACGAGCTCCTGAAGATCGA GAAAGCAGAGTATCCCATGAGGATAGTCTACTGCTTTGGCATATCTCATGAGCATCCGGGGACTTTCATTCTGACGTATATAAGGAGTACGAATCCACAT CATGAGTACGTAGGCCTCTACCCGAAGGGATTCAAGTTCCGGAAGAAGATGTTTGAGGACATCGACAGGCTCGTCAATTACTTCCAGAAGCACATCGATG ATCACCCGCAAGAATCAGGGCCGTCGATTAGATCGATGGCTGCCATGGTGCCGATGAGGAGCTCTACTCCCGGAGGAGGGTCTTCGGGAGATGGTGGTTG GGGTGGTGGTGGGTCGAACAATGATGGTGGTGGATGGAGAGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGGGGGGGGGGGGGCCGGCCCCGGCGGCGGTGGCAGTGGTTGGTGA
AA sequence Show only first row Show all	>Lus10003130 pacid=23169990 polypeptide=Lus10003130 locus=Lus10003130.g ID=Lus10003130.BGIv1.0 annot-version=v1.0 MPRNVISDEEDEMEFDDEDREPEQGGAGDDDEDEDEEGQDEYEKDDFIVDDVEEEPDEEEERADSDEERQRKKKKKKKREAEVLDDEDYELLLDNNAIQR RPPKDSKKFKRLKKAQRDTDGDGNEFSDEEFDGSGKGGRTAEEKIKRSLFGDYEGNNLEDIAEEEEQIEEEEDVEVGEEDEMADFIVDEEEIDENGLPVR RKKIKRKKLRQAFGASSSALQEAHEIFGDVDELLELRKQQGKDSAEQQERRLEDEFEPTVLAEKYMTEKDDVIRQTDIPERMQILEETTGPPTVNADSLD GESTWIYNQLASGVASIQGLAASLQDLASNKDAVERFKDEISRFLDFHHVQKLDIPFIATYRKDECSSLFKDPEQLKSDYDIHDDNDRSPKLKWHKVVSA IQDLDRKWLLLQKRKTALRLYYRKRYDEESMRIYDETRLNLNRHLFKSIIKSLEAAESEREVDDVDAKFNLHFPPGEVGANEGQYKRPKRKSTYSTCNKA GLWEVANKFGRSAEQLGRHLSLLEMGVDLEDAKEAPEEMASNFTCAMFETPDAVLKGARHMAAVEISCEPYVRKHVRAAYMENAVVSTSPTSDGNSTIDS FHQFYGVKWLREKPVSEFKDGQWLLIQKAEEEKLLQVTFKLPEKRMDELVTECKDHYLSDGVSKSAQLWNEQRQLILQDALFGFLMPSMEKEARSLLTSR AKRWLLWEYGQVLWNKVSVGPYQRKENDRSSDDEAAPRVMACCWGPGKPATTFVMLDSAGEVLDVLYTGSLTLRSQNVDDQQRKKNDQQRVLKFMMDHQP HVVALGAVNLSCTKLKEDIYEIIFKMVEENPRDVGHDMDELSILYGDESLPRLYENSRISSDQLPSQSGIVKKAVALGRYLQNPLAMAATLCGPEREILS WKLNPLESFLTSDEKYAMVEQVMVDVTNQVGFDVNLAIGHEWLFAPLQFISGLGPRKAASLQRSLVRAGGIYTRKDFVTIHDLGKKVFVNAVGFLRVRRS GLAASSSQFIDLLDDTRIHPESYGLAQDLAKDMYELDNVDANDDDDLEMAIEHVRDHPSRLRNLTIDQYLLDKGMLNKTETLKDIRRELIHGFQDWRKPY KEPSQEEEFYMISGETEDTVAEGRIVQATVRRVVNGSKAICSLESGLTGILMKEDYGDDSRDNSELSDRLREGDILTCRIKSVQMNRYQAYISCKESEMR NNNRYQPVRDLDPYYHEDTVSLQSDQEKARKEKDLAKKHFKPRMIVHPQFQNITSDEAMEYLADMEPGASIIRPSSRGPSFLTLTLKVYNGVYAHKDIVE GGKEHKDITSLLRIGKTLKIGEDTFEDLDEVIDRYVDPLVVHLKTMLNYRKFRRGTKAEVDELLKIEKAEYPMRIVYCFGISHEHPGTFILTYIRSTNPH HEYVGLYPKGFKFRKKMFEDIDRLVNYFQKHIDDHPQESGPSIRSMAAMVPMRSSTPGGGSSGDGGWGGGGSNNDGGGWRGXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGAGPGGGGSGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	0	1
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	3.0	0.9155
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10007440 [exp]	5.0	0.8567
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	5.8	0.9077
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	5.9	0.8927
AT5G18230			transcription regulator NOT2/N...		Lus10002632 [exp]	6.9	0.8976
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	8.5	0.8989
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	9.7	0.8638
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	11.6	0.8967
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Lus10030142 [exp]	11.7	0.8881
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	12.8	0.8747

Compare expression of checked genes

Lus10003130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.