Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24270 79 / 7e-18 unknown protein AT5G13090 77 / 1e-16 unknown protein AT1G62422 66 / 2e-13 unknown protein AT1G12020 66 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011343 [exp] 187 / 7e-59 AT5G13090 149 / 2e-43 unknown protein Lus10029957 [exp] 59 / 2e-10 AT1G62422 141 / 2e-42 unknown protein Lus10031521 [exp] 57 / 7e-10 AT1G62422 125 / 4e-36 unknown protein Lus10015161 [exp] 50 / 2e-07 AT1G62422 97 / 8e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168500 [exp] 86 / 6e-20 AT5G13090 100 / 1e-24 unknown protein Potri.001G059400 [exp] 86 / 1e-19 AT5G13090 119 / 8e-32 unknown protein Potri.012G101200 [exp] 72 / 3e-15 AT5G13090 93 / 2e-22 unknown protein Potri.015G099400 [exp] 73 / 5e-15 AT3G08900 114 / 5e-29 reversibly glycosylated polypeptide 3 (.1) Potri.011G022900 [exp] 67 / 2e-13 AT1G12020 115 / 2e-31 unknown protein Potri.004G001800 [exp] 67 / 2e-13 AT1G12020 135 / 3e-39 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003131 pacid=23170013 polypeptide=Lus10003131 locus=Lus10003131.g ID=Lus10003131.BGIv1.0 annot-version=v1.0 ATGTTCCTCAAATCCACCTCCTCCTCCTCCTCCTCCGCCGCACCGAACAAGAAACCCGCCAAGAAACCGGCCAAGAAATCAGCCGCCGCCACCACCAACA GCAGCACCTCGAATCCTTCTCACAAGGCTCCGGTGTTCGGTTGTGACTGCTTCGACTGCTACACGAGCTACTGGTTCCGCTGGGACTCCTCCGCCAACCG AGAGCTCATCCACCAAGCCATCGAAGCCTTCGAGGAGCACCTCCTCAGCTCTGAGCACGATAAATCCAGCACTGGCAGCAGCAGCAGCAAGAAGAAGAAG ATCCGTGACAAAACGGCGCGTCGTTTCACTCCAGCTGACGAACCCAACAAGGAAAAAGACCAGCTTCAGTTGCAGCTTCTTCCAGCACTGTTTAGTTGGC GCTTTCTCCCGGCCCCCCCCCTGCCGGCCCCGCCGCCGCCGCCACGTGAGGCGGCGTCCGATGAAGCTGAATCTGCTACTTCCACTCCTCAGCTGGTTTC TACCCCCCAGCTGGTGGTTGAGCAGGAGATCCACGACGATTTGAAGGATGAGGTGGAGAAAGCGGTGGTGTTGAGGTCGCCGGCGGGGGTGGGGGGAGCG GGGGGGGGAGGGGAGGGGGGGAGAGGGGGGTGGCGGGGGGCGCGTTTAGGGTTATTGAATTCCCGTTTATGGAGCCTGTGGGGTCCGAACCTGTGA
AA sequence Show only first row Show all	>Lus10003131 pacid=23170013 polypeptide=Lus10003131 locus=Lus10003131.g ID=Lus10003131.BGIv1.0 annot-version=v1.0 MFLKSTSSSSSSAAPNKKPAKKPAKKSAAATTNSSTSNPSHKAPVFGCDCFDCYTSYWFRWDSSANRELIHQAIEAFEEHLLSSEHDKSSTGSSSSKKKK IRDKTARRFTPADEPNKEKDQLQLQLLPALFSWRFLPAPPLPAPPPPPREAASDEAESATSTPQLVSTPQLVVEQEIHDDLKDEVEKAVVLRSPAGVGGA GGGGEGGRGGWRGARLGLLNSRLWSLWGPNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24270			unknown protein		Lus10003131 [exp]	0	1
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10027355 [exp]	3.2	0.8243
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035215 [exp]	9.0	0.7958
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10011065 [exp]	9.5	0.7842
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	11.7	0.8157
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	12.2	0.7687
AT1G27050	HD	ATHB54	homeobox protein 54 (.1)		Lus10036708 [exp]	16.3	0.7704
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	17.5	0.7623
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	17.8	0.7919
AT1G01840			unknown protein		Lus10041376 [exp]	19.1	0.7874
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	21.5	0.7543

Compare expression of checked genes

Lus10003131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.