Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011342 [exp] 216 / 1e-71 ND 43 / 5e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003132 pacid=23169996 polypeptide=Lus10003132 locus=Lus10003132.g ID=Lus10003132.BGIv1.0 annot-version=v1.0 ATGGACACCAAGGTCAAAAGGGTCCAACCAGCAAGAAGGGCTAATGTTGATCTTCAAAACCTTGTTCTGAATTCGTTAGTTGTAGTGGGTTTCAGCTTCT TGTTGTATTCACCAACTAAGCAGCTTGTGTTACTACATGTTCCTAGTCTTGTGTCGTGTCTCACAAGCCACAAGTGTGTTTTCTTGTTGGTGAATGTCAT CGTGGTTTTCCTCCTGGTCGGAGAATCCAAGCTCGAAAGTCTCGTGGGCCGGTGGCAGCTCGAATCTACTTCTACTACTGGTGATGCATATGATGAGTAC ATTCGACGAGCTAGAACCGTGAAGGAAGAGGAAAGTGTTGAGGTGGAGGATGAATCGATGTCGTTTCATGATGCTGAGGTGGGGGAAGAAGTGGAGGACA AGCAAGTGATTGTTTGTGAAGAGAAAGTAGAAGAAGAAGTGGTTGAAGAAGAAGAAAGGAAGCAAGTTGAAGAAAGGGGGAAAGGAGATGAGCTGAATAG GAGGATAGAGGAGTTCATTGCAAGGGTCAATAGACAAAGGCAGATTGAGATCGGTAGCGGAGTCAGAGCGGTCAGGGACCAACGTTTGATTTCAAGTTTG AAAGTTAACTAA
AA sequence Show only first row Show all	>Lus10003132 pacid=23169996 polypeptide=Lus10003132 locus=Lus10003132.g ID=Lus10003132.BGIv1.0 annot-version=v1.0 MDTKVKRVQPARRANVDLQNLVLNSLVVVGFSFLLYSPTKQLVLLHVPSLVSCLTSHKCVFLLVNVIVVFLLVGESKLESLVGRWQLESTSTTGDAYDEY IRRARTVKEEESVEVEDESMSFHDAEVGEEVEDKQVIVCEEKVEEEVVEEEERKQVEERGKGDELNRRIEEFIARVNRQRQIEIGSGVRAVRDQRLISSL KVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003132 [exp]	0	1
AT1G52140			unknown protein		Lus10025828 [exp]	2.0	0.9211
					Lus10011342 [exp]	2.0	0.9153
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10024581 [exp]	3.0	0.9130
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10009054 [exp]	4.5	0.8816
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Lus10007231 [exp]	4.9	0.9105
AT5G05280			RING/U-box superfamily protein...		Lus10034228 [exp]	5.0	0.9057
AT1G52140			unknown protein		Lus10012967 [exp]	8.1	0.8935
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	8.5	0.9041
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	9.9	0.8927
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	10.2	0.8882

Compare expression of checked genes

Lus10003132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.