Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09220 476 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 301 / 2e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 286 / 4e-91 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 283 / 8e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 283 / 2e-88 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 273 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18840 272 / 2e-85 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G15300 271 / 3e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09190 269 / 6e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 273 / 8e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011341 [exp] 878 / 0 AT1G09220 462 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 293 / 6e-94 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 292 / 2e-93 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023592 [exp] 292 / 5e-92 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 285 / 2e-90 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10010385 [exp] 281 / 3e-88 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031661 [exp] 278 / 4e-87 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 278 / 5e-87 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010901 [exp] 272 / 1e-86 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054400 [exp] 622 / 0 AT1G09220 487 / 8e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 316 / 1e-101 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G035900 [exp] 313 / 3e-100 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 303 / 1e-97 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 293 / 2e-93 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G065500 [exp] 291 / 6e-92 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 290 / 2e-91 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G034900 [exp] 285 / 4e-91 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G175900 [exp] 280 / 1e-88 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 279 / 4e-88 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003133 pacid=23169999 polypeptide=Lus10003133 locus=Lus10003133.g ID=Lus10003133.BGIv1.0 annot-version=v1.0 ATGGAGAAATCTCTATATGTGCTACTCAGAAATACAGTAGCCAATCTGTCAATAGCTCGACAAGCTCACTCTCTACTGCTTACAACAGGCATATTAAGCC GTTCCATGCTCCATTTCAACACTTTGCTTCGGTCTTACTCCCTCAGTGAAGCTCCTCACAGATCTTTCTCAGTCTACAGCCAACTCCAGACGTTGTATTA TTTCAATTCCTCGGCTCTTCAACCACCTTCATTTGACAGCTTTTCCTACACTTTCTTGATCAATGCAGCTACTTACGCTTCCTTTCTTGCCGTTGGAACA CAGTTTCACTGTCTTGGAATCAAAGCTGGGTTTCAGTCCCATGTCTACGTCCAGACCTCGCTGGTCAACATGTATGCTGGTGGTGGTTTGTTATCCGATG CGCTGATCGTGTTCGACGAAATGCCTGAGAGAAATGCAGTTACTTGGAATGTTATGATAACCGGGTTGGTCAAACTGGGCGAGTTGGAATTCGCTCGCTC GTTCTTTGACGAGATGTTGGATAAGAATGTCGTCACTTGGACCTGTATGATCGATGGATACGTAAGGATGGGCAGATTCGGTGAAGGTTTTGCCTTGTTT CGTAGGATGGCTTGTTTCGAGGATGACGTGATCAGGCCTAGTGAGATAACCATTCTCGCCATTCTTCCTGCTGTTTCTTCTTTGAAGATGCTGAAGCATT GCAGGTTGTTACATTCTTATTCGGAGAAACGTGGGTTTCACGCCTTCGACATCCGGGTGGCTAACTCAATTGTGGATACCTACGCCAAATGCGGCTGCAT AGCAAGTGCTTCCAGATTCTTTAACGACATGGAGAGGAAGAATTTGGTGTCGTGGACATCGATCATTACAGGGCTAGCAATGCACGGGATGGGTGAGGAA GCGATGGAGTGTTTCGATCTAATGGAGAGAGCCGGTTGGAAGCCAAATCGAGTGACTTTCTTGAGTGTGTTCAATGCGTGCAGTCACGGAGGGCTATACG AGCAAGGACTCAAGTTCTTCGACGAAATGGTGAGTAGTAAGCATCGAGTTAAGCCGGATATAAAGCATTACGGGTGTTTGGTTGACATGCTGGCTAGGAT AGGGAGGCTAGAAGAAGCTGAAAGTTTGGCAATGGGGATACCTAGTGAGATTGCTAACGTGGTGATTTGGAGGACAATTCTTGGAGCTTGTAGCTTTCAT GGTAACGTTGAGATGGGGGAAAGGGTGACGAGGAAGATAATGGAGATGGAGAGGGGACATGGAGGTGACTATATTCTGATGCATAACATATTTGTAGGGT CTGGGAGGTTTTGTGATGCTGAAAGAGTTAGAAGGTTGATGTACCAGAGGCGTGCCTTCAAACTTCCTGGCCAGAGTTCGATCTAA
AA sequence Show only first row Show all	>Lus10003133 pacid=23169999 polypeptide=Lus10003133 locus=Lus10003133.g ID=Lus10003133.BGIv1.0 annot-version=v1.0 MEKSLYVLLRNTVANLSIARQAHSLLLTTGILSRSMLHFNTLLRSYSLSEAPHRSFSVYSQLQTLYYFNSSALQPPSFDSFSYTFLINAATYASFLAVGT QFHCLGIKAGFQSHVYVQTSLVNMYAGGGLLSDALIVFDEMPERNAVTWNVMITGLVKLGELEFARSFFDEMLDKNVVTWTCMIDGYVRMGRFGEGFALF RRMACFEDDVIRPSEITILAILPAVSSLKMLKHCRLLHSYSEKRGFHAFDIRVANSIVDTYAKCGCIASASRFFNDMERKNLVSWTSIITGLAMHGMGEE AMECFDLMERAGWKPNRVTFLSVFNACSHGGLYEQGLKFFDEMVSSKHRVKPDIKHYGCLVDMLARIGRLEEAESLAMGIPSEIANVVIWRTILGACSFH GNVEMGERVTRKIMEMERGHGGDYILMHNIFVGSGRFCDAERVRRLMYQRRAFKLPGQSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09220			Pentatricopeptide repeat (PPR)...		Lus10003133 [exp]	0	1
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	3.9	0.8938
AT2G42700			unknown protein		Lus10033605 [exp]	7.1	0.8539
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10014455 [exp]	7.7	0.8825
AT1G64385			unknown protein		Lus10032376 [exp]	8.9	0.8917
AT5G45030			Trypsin family protein (.1.2)		Lus10031785 [exp]	9.2	0.8242
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	11.5	0.8683
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	13.7	0.8806
AT5G53420			CCT motif family protein (.1.2...		Lus10014919 [exp]	14.2	0.8351
AT3G25120			Mitochondrial import inner mem...		Lus10008094 [exp]	19.4	0.8582
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	19.5	0.8715

Compare expression of checked genes

Lus10003133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.