Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13110 948 / 0 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G24280 931 / 0 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G35790 854 / 0 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G09420 553 / 0 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT3G27300 477 / 1e-163 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 463 / 3e-158 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011340 [exp] 1165 / 0 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10006386 [exp] 859 / 0 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10012340 [exp] 676 / 0 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10014615 [exp] 460 / 4e-157 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10032079 [exp] 465 / 1e-154 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 432 / 8e-147 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10012339 [exp] 174 / 3e-52 AT5G35790 181 / 5e-56 glucose-6-phosphate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G059900 [exp] 967 / 0 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.003G168000 [exp] 947 / 0 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.014G166800 [exp] 860 / 0 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.013G005200 [exp] 559 / 0 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.001G337400 [exp] 462 / 7e-158 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.017G070200 [exp] 462 / 8e-158 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.005G005866 [exp] 84 / 2e-18 AT1G09420 133 / 4e-36 glucose-6-phosphate dehydrogenase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00479 [flax] [poplar] G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003134 pacid=23170007 polypeptide=Lus10003134 locus=Lus10003134.g ID=Lus10003134.BGIv1.0 annot-version=v1.0 ATGGCGACTTTATCATCAGGAGCAGCTCAATGCCGTTCGTATTCATCCTCTCTGCTTCCTCAATCAAATGGGCAGCGATATAATCGTCGGCTCAACTTCT CTCCTCAGTCTCATAAGAAAATTTCTCCAGCTGTGGTTCTCTCTCAGGGGGATTCTCGCCCTCGTGCGGTGTTGATGCAGGATGGTGCTGTGGCAACTCC TGCAAATCCAGCACCTAAGGAAGAGATCAAGAAGAAGAGATTGGAAGATGGATTGCTTTCTTCTTCTTCAGGAATCTCTTCTCAGGAATTGAAAGAGTCA GCTGGCTTTGATATCAATGAAAACGAGTCTTCTGTCACTATCACTGTTGTTGGAGCCTCTGGGGACCTGGCTAAAAAGAAAATCTTTCCTGCACTTTTCG CACTTTACTACGAGGGTTGTCTTCCAAAGCATTTTACCGTGTTTGGTTATGCTCGTAGTAAGATGACTGATGCCGATCTTAGGAACATGGTTAGCAGAAC CTTGACTTGCAGAATTGACAAGAGGGACAACTGTGAGGAAAAGATGGATCAGTTTCTTAAAAGGTGTTTCTATCATTCAGGTCAATATGATTCACAAGAG CACTTTGCACAACTAGATGAAAAGCTCAAAGAGCACGAGGGTGGCCGGGTATCGAATCGCCTGTTTTATTTGTCTATTCCACCGAACATATTCATCGATG CTGTGAAATGCGCCAGCTCCTCAGCTTCTGCTGCCAATGGCTGGACTAGAGTCATTGTTGAGAAACCATTTGGCCGAGACTCGGAATCTTCTGCTGCTTT GACAAGATCCCTCAAGCAGTACCTGACTGAGGATCAGATATTCAGGATAGACCACTATCTAGGAAAGGAGCTAGTGGAGAATCTTTCGGTTCTCCGCTTC TCGAATCTCATATTCGAACCATTGTGGTCGAGACAGTATATCAGGAACGTGCAGTTCATATTCTCTGAAGATTTTGGCACTGAAGGACGCGGAGGGTATT TCGACCATTACGGGATAATAAGAGACATAATGCAGAACCATCTGCTTCAGATACTTGCTCTTTTCGCTATGGAGACTCCCGTTAGCTTGGATGCAGAGGA CATCAGGAATGAGAAGGTCAAAGTTTTGCGATCGATGAGGCCTTTGAAACTTGAGGATATGGTGATTGGGCAGTACAAGAGTCATACTAGAGGAGGAACC AGTCATCCAGGCTATACTGATGACAAGACAGTACCAAAGGACAGCTTAACTCCAACTTTCGCAGCAGCTGCTCTCTTCATTGATAATGCGAGATGGGACG GAGTCCCCTTTCTTATGAAAGCTGGAAAAGCTTTACACAACAAAAGTGCTGAGATCAGGGTACAGTTCAGACATGTCCCCGGGAACTTGTACAACCGCAA CATTGGAACAGATCTCGATCTAGACACGAACGAGCTTGTGATTAGAGTGCAGCCAGATGAAGCAATTTATTTGAAGATCAATAACAAGGTGCCCGGACTC GGGATGAGACTAGACCGCAGTAACCTGAATCTTCTTTATTCAGCAAGGTACTCGAAGGAGATTCCAGACGCGTACGAGAGGCTTCTTCTGGACGCAATCG AAGGCGAAAGAAGACTGTTTATCAGAAGTGACGAGCTCGATGCTGCTTGGTCTCTTTTCACACCGGTTCTGAAGGAAATCGAGGAGAAGAAGATCGTCCC CGAGTACTATCCATATGGAAGCCGAGGCCCTGTCGGTGCTCACTACCTTGCAGCAAGATACAATGTCAAATGGGGTGATGTTGGCATGGAGCAATAG
AA sequence Show only first row Show all	>Lus10003134 pacid=23170007 polypeptide=Lus10003134 locus=Lus10003134.g ID=Lus10003134.BGIv1.0 annot-version=v1.0 MATLSSGAAQCRSYSSSLLPQSNGQRYNRRLNFSPQSHKKISPAVVLSQGDSRPRAVLMQDGAVATPANPAPKEEIKKKRLEDGLLSSSSGISSQELKES AGFDINENESSVTITVVGASGDLAKKKIFPALFALYYEGCLPKHFTVFGYARSKMTDADLRNMVSRTLTCRIDKRDNCEEKMDQFLKRCFYHSGQYDSQE HFAQLDEKLKEHEGGRVSNRLFYLSIPPNIFIDAVKCASSSASAANGWTRVIVEKPFGRDSESSAALTRSLKQYLTEDQIFRIDHYLGKELVENLSVLRF SNLIFEPLWSRQYIRNVQFIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLKLEDMVIGQYKSHTRGGT SHPGYTDDKTVPKDSLTPTFAAAALFIDNARWDGVPFLMKAGKALHNKSAEIRVQFRHVPGNLYNRNIGTDLDLDTNELVIRVQPDEAIYLKINNKVPGL GMRLDRSNLNLLYSARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKEIEEKKIVPEYYPYGSRGPVGAHYLAARYNVKWGDVGMEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	0	1
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	1.0	0.9755
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	1.4	0.9644
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	2.4	0.9639
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	3.7	0.9582
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	4.0	0.9610
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	5.0	0.9589
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	5.3	0.9453
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	5.7	0.9468
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	6.0	0.9585
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	6.0	0.9505

Compare expression of checked genes

Lus10003134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.