Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69040 508 / 4e-179 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 476 / 2e-166 ACR5 ACT domain repeat 5 (.1.2) AT1G76990 459 / 6e-160 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT3G01990 446 / 5e-155 ACR6 ACT domain repeat 6 (.1) AT1G12420 409 / 3e-140 ACR8 ACT domain repeat 8 (.1) AT4G22780 403 / 8e-138 ACR7 ACT domain repeat 7 (.1) AT5G25320 394 / 2e-133 ACT-like superfamily protein (.1) AT5G65890 370 / 9e-125 ACR1 ACT domain repeat 1 (.1.2) AT2G39570 47 / 2e-05 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT2G36840 45 / 0.0001 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011329 [exp] 827 / 0 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 491 / 2e-172 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 459 / 1e-159 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10041543 [exp] 457 / 7e-159 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10028646 [exp] 446 / 2e-154 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 448 / 1e-152 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10011715 [exp] 382 / 4e-129 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10019191 [exp] 297 / 9e-99 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 258 / 1e-81 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060100 [exp] 686 / 0 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.003G167800 [exp] 664 / 0 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.010G138600 [exp] 513 / 0 AT1G69040 743 / 0.0 ACT domain repeat 4 (.1.2) Potri.T124144 [exp] 509 / 1e-179 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 509 / 5e-179 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.005G185600 [exp] 463 / 1e-161 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.002G074800 [exp] 459 / 8e-160 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.001G327000 [exp] 455 / 2e-158 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.001G115600 [exp] 455 / 3e-158 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.003G116600 [exp] 447 / 2e-155 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Lus10003136 pacid=23170001 polypeptide=Lus10003136 locus=Lus10003136.g ID=Lus10003136.BGIv1.0 annot-version=v1.0 ATGGATGTCTGGTCTCCTTCTGTCGCCATGGATGACGAGTTTGAGAAGCTCCTCATTCGTATGAACCCACCAAGGGTAACCGTCGACAATTCATCCAGCC GGAAAACCACCTTGATTAAGGTTGACAGTGCGAATAAGCATGGGAGTTTGTTGGAGGTGGTTCAGGTCCTCACTGATCTTGATCTCATCATTCGTCGAGC TTACATTTCTTCTGATGGTGAATGGTTCATGGATGTGTTTCATGTCACTGATCAGAATGGGAATAAGCTATCTGAGGGTGATGTTGTTGACAGAATTCAA CAGTCGTTGGGACCGAGATCTCGAAGCAGTTTCCGGTCCTTGAGGCGATCAGTGGGGGTCCAAGCTGCAGCGGAGAACACAACCATCGAATTGACAGGAA GGGATCGACCGGGGTTGCTCTCGGAAGTGTTTGCTGTTCTAGCTGACCTGAAATGCAATGTGGCTGCAGCTGAAGTCTGGACACACAATTCGAGGATGGC GTCGGTTGTTTACATCACAGACGAATCCACTGGGGTTCCGATTGATGACCCTGAGAGGCTTGGAAAGATCAAGCAGCTTCTGCTGTACGTCTTGAAAGGG AATACTGCAGTGTCGGTGGGGTCTACTCATAAGGAGAGGAGGCTGCACCAGATGATGTATGCTGACCGTGACTACGATGACTTGGAGGAGTTTGAATCGG GCGGTGGGCGTAGCAGTAGTAAGCGCATTGTGAATGTGGAGAATTGCTTGGAAAAGGGGTACACTGTGGTGAACTTGCGGTGTCCAGACCGGCCTAAGCT GATCTTTGATACAGTATGCACATTGACTGATATGCAATATGTTGTTTATCATGGTACAATCATAGCTGAAGGACCGGATGCTTATCAGGAATACTACATC AGGCATGCAGATGGATCACCTATTAGTTCAGAAGCAGAAAGGCAAAGGGTGATCAATTGCTTGGAGGCTGCTATCAAAAGGAGAACTTCCGAGGGGATAA GACTGGAGCTTTGTTGTGAAGACCGGGTAGGACTATTGTCAGACGTCACGAGGATATTTAGGGAAAACGGTCTTTCGGTGAGTCGAGCTGAGGTTACTAC AAGAGGCTCTCAGGCTGTGAATGCTTTCTATGTAACTGATGCATCAGGGTACACTGTGAAGAGTGAAACAGTTGAAGCAGTTAGGAACGAGATCGGACAG GCTATACTCCGTGTGAAGGAGGATTCGTACTCGAACTCGAGCTCGAGCTCCACAACGGTGGAGCAAGGTAAATTCTCTCTGGGGAATATCTTCAAATCTA GGTCAGAGAAGTTTCTGTATAACTTGGGGTTAATCAAGTCTTGTACTTGA
AA sequence Show only first row Show all	>Lus10003136 pacid=23170001 polypeptide=Lus10003136 locus=Lus10003136.g ID=Lus10003136.BGIv1.0 annot-version=v1.0 MDVWSPSVAMDDEFEKLLIRMNPPRVTVDNSSSRKTTLIKVDSANKHGSLLEVVQVLTDLDLIIRRAYISSDGEWFMDVFHVTDQNGNKLSEGDVVDRIQ QSLGPRSRSSFRSLRRSVGVQAAAENTTIELTGRDRPGLLSEVFAVLADLKCNVAAAEVWTHNSRMASVVYITDESTGVPIDDPERLGKIKQLLLYVLKG NTAVSVGSTHKERRLHQMMYADRDYDDLEEFESGGGRSSSKRIVNVENCLEKGYTVVNLRCPDRPKLIFDTVCTLTDMQYVVYHGTIIAEGPDAYQEYYI RHADGSPISSEAERQRVINCLEAAIKRRTSEGIRLELCCEDRVGLLSDVTRIFRENGLSVSRAEVTTRGSQAVNAFYVTDASGYTVKSETVEAVRNEIGQ AILRVKEDSYSNSSSSSTTVEQGKFSLGNIFKSRSEKFLYNLGLIKSCT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	0	1
AT1G68710			ATPase E1-E2 type family prote...		Lus10035068 [exp]	1.7	0.9577
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	8.5	0.9541
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	9.4	0.9539
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	9.6	0.9541
					Lus10026056 [exp]	10.6	0.9480
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10014066 [exp]	11.4	0.9424
AT5G26770			unknown protein		Lus10001515 [exp]	11.7	0.9204
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	12.0	0.9309
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	12.6	0.9530
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10030720 [exp]	13.9	0.8969

Compare expression of checked genes

Lus10003136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.