Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27430 461 / 2e-137 GYF domain-containing protein (.1) AT1G24300 458 / 2e-136 GYF domain-containing protein (.1.2) AT5G42950 108 / 2e-23 GYF domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011331 [exp] 2453 / 0 AT1G27430 718 / 0.0 GYF domain-containing protein (.1) Lus10035191 [exp] 384 / 4e-111 AT1G24300 329 / 8e-93 GYF domain-containing protein (.1.2) Lus10032021 [exp] 380 / 9e-109 AT1G24300 336 / 2e-94 GYF domain-containing protein (.1.2) Lus10032720 [exp] 82 / 5e-15 AT5G42950 1098 / 0.0 GYF domain-containing protein (.1) Lus10012078 [exp] 82 / 5e-15 AT5G42950 1100 / 0.0 GYF domain-containing protein (.1) Lus10035192 [exp] 52 / 6e-07 AT1G27430 59 / 2e-10 GYF domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326500 [exp] 444 / 3e-130 AT1G24300 296 / 3e-81 GYF domain-containing protein (.1.2) Potri.001G326700 [exp] 440 / 5e-129 AT1G24300 300 / 2e-82 GYF domain-containing protein (.1.2) Potri.017G069220 [exp] 436 / 5e-128 AT1G24300 387 / 4e-111 GYF domain-containing protein (.1.2) Potri.002G262300 [exp] 103 / 6e-22 AT5G42950 714 / 0.0 GYF domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0673 [flax] [poplar] GYF PF02213 [flax] [poplar] GYF GYF domain
Representative CDS sequence Show only first row Show all	>Lus10003139 pacid=23169995 polypeptide=Lus10003139 locus=Lus10003139.g ID=Lus10003139.BGIv1.0 annot-version=v1.0 ATGGCTGAACGCAAGCTCGATCTGCCTGATGATCTCCTCTCCTCCAAGCAATCCGATCACTCTGCTCATCCTAAAGGTTTGGCAGGAATTGATGTGGATA AGTTCCATGGTGGTTCACAAGATCAATTAGCAGCAGATAGCACAATACCTTTGTCTCCACAGTGGCTTTATACAAAACCAAGTGAGACTAAGATGGATGT TCGTTCCCCCACAGCCGTCTCTCAGGCAGTTGTCGATCCAGGCCAGAAGGATACTTGGCGTCTCGATGGAACAGAAGACAGGAAGGACTGGAGACGGATT GCAAATGAGAATGAAAGTAACCGCAAGTGGCGTGAAGAGGAGAGGGACACTGCCTTGCTAGGTGCCCGGAGAGAACGCAGGAAAGTAGATCGCCGTGTTG ATGCTGTCCGAGAAGTTACAGACAATAAGCCTGTAGCTTCCTCTGAGCGATGGAATGATGGAGGGAATCGAAATGCTGCAACTGAAACACGGCGCGATAA CAAATGGTCATCTAGATGGGGTCCAGAAGACAAAGATAAGGACTCAAGAATTGAGAAGAAAACAGACTTGGAGAAAGAGAAAAATGACATTGACAATGAG AATCAAGCTTCTATAGGAAGCAATCGAATAGCTTCTGAGCGGGAGTCTGACTCTCGTGACAAATGGAGGCCAAGGCATAGGATGGAGGTTCATTCTTCAA CTCCCTCTTCTTATCGTGCTGCCCCTGGATTTGGGCCTGAGCGAGGCCGATTGGAAGGTTCAAATACTGGGTTTGCTGTTGGACGGGGAAGGTCTAGTGC AACAGGGAGATCTGTACCTATTGGAGCTACCCCCTTGTACATAAGTGAAAGCTTTATCGGAAAGCCGGCAATGTTGATTGCCACATTTTGCTATCCAAGG GGGAAACTTCTTGACATTTATCGTCGACAGAAGCTTGATCTGTCCTTTGGAAATATGCCGGAGAATATGGAGGAATCTCCCTCAATTACTCTAGTGAGCT GTACAGGGCCATTGGCTTTGGTGACTCCTGATGCCGATGAGGAGTCTGTTCTTACTGATATACGGGAGGGAAAGATCACAAGTAGTGAGGTGGTGTATAA TTCATCATCCAGGAAAGAGGGACTGAACGAGAATAGTTCAGCCGGCGTTGATATATCTTCTTCCGGTGGGAAATTGGACACCCTGAACTCCACTATCGTC AAAGATTCTGCTGGTACCTTTCAAGATCCTGCATTTGGCCATGGAAACCAATATAACGATGCTATGCTACTATCGAGTCAAGGTCTAGACAAAGACGATA TTAGTCAAGAAGTTGAAGGCCGGAGAGTTACTGATGTCATAAGAAGCGATGGTATAAATGGAATCAAGACTGATTCCAGTGTTGACCAGCATGACCAGTT TGTCCAAGAAATTGAGGCTAATCTACCAGATGATCCGAATTCTCTGTTTAATATTCCCTCATTTGAGAGGAATATAGCAAGTAATGGAGAGGAATCTGCT ATTCCACCTGAAGACTTATACTTCTGCTATATAGATCCTGAGGGGAACACTCAAGGACCATTTCTGGGAGCAGATATAGTCATGTGGTTTGAAGAGGGGT ACTTTGGGACGGAGTTGCCAGTTCGCTTGGCAGATGCCCCTGAAGGGACCCCTTTTCAGCACTTAGGTGAGGTCATACCGCAGCTGAAGTACAAAGAAGC ATCCGAGACGGAACAACCTGTCACTATGGGAAATGGAACATCGGAGTTTGATGCTAGCTTGTCAATGGCCTCAGGACCTGAAACTACTCAGTCAGCCATG AAAACTTATGGGCAGTCATTAATCCATCATAATGCTACAAGTGAAATTGAGGATCCATCAAAACGGGCATCTATCAATGCCCAAAACTTTCATGATCTCA GTGTTCAAGACGAAGAAATTGTGTTTCCAGGTAGACCTGACAGCACCAGCCTCCCCCTTGTAGCATCATCCGGAAGTCTGCGACTTCCAGGTTCTAATAG CGATCCATCTCTTGCAGATCAACTGACAGACCCTAGCTTGACAAATCAGACCGACAGTAAGTTGCATCCCTTTGGCCTGTTCTGGTCTGAGCTTGAAGGC TCTACTGCAAGACAACCTACAAAACCCGAGGTGCATAAGACAACTTCCTTTTCTGCCTTGAGTGACCCTGCACCTGAGAAATGGTCAAGTATCTACAGGC AAGACTCAGCCTCTGGCCCTAATGTGTTGCAAGACTCTATTAGTAATCACCGTTTTTCGCTTCTTGAGCAAGAGCATAACCAGTTGGGTCTGGCAGAGCA GCTCATGTCCCGACAAATTCAGCAGCAAAATATACTATCGCCTCATACACTCATGAACGAGCCGCCGATGGAACGTGGGCATAGTCAGAATCTTATTCAC CAGCAGTTAATGGGACATTCTACTCCAGACATGGAACATATTTTGGCACTCCAGCTGCAACAGCAGCGTCAACTTCAGCGCCAGGATAGACAACAGCAGT TGCAGCAGCAGTTTCAGCAACAGCAGCAGTTGCAACAACAGCAGAAGCTCTTGCAGGAGAGACAACAATCTCAACTTCGACAGGTCCTTCTTGAACAGTT ATTGCATGGTCAGGTACCTGATCATGGCCATCCACAGTCACGTGTTGATCATATTAGGGCTAATAGTATTCTCGAACAAGTTATCTTGGAGCAGCAACTT CAGCAGGAACTTCAACAGAGGCCCCATCCTTCGAGACATTTTCAACCATCCATGGAGCATCTAGCCCAGGCCAAGCTTGGTCAGACAATGCAGCAAGAGC AGCAGAGAGATTTGTTTGAGCTATTATCACGTGCACAGCATGGGCAAATACAAAATTTGGAGCAGCAATTCATCCGGCAGGAACAGATACAAGCAATGCA GCTGGCTATGGGATTGCGGCCACAAACCAATGTGGAAGAAGAGAGACTTCATGACTCTATGTGGCCAGTGAATGAAAATGATCAGTTCATGAGGAGTCTT TCCTCTAATCAGAGAAATCATTCGTCAGGGATGAACCCATTGGATTTATATCAGAGACAGCATATGCAACGACACGAGGAGCAGCAGCTTAGCCACCTCG ATCGAACTATTTCATTTCAGGACCGCCTACGACAAGGTCTTTTTGAGACTGGTGCTACACCCTTTGAACGATCCATCTCGATGCCTCCTGGTGCTTCAGG GATGAATATGGATGTTGTAAATGCCGTGGGTCATCCTCATCGTTCAGAACTTCCAGAGTTTGCCCCACGTGTACAGTCTTCTGGTCATTTAGGAGCATTT ACTTCTAATGCCCACTCTCAGAATCCGCATCACCCTGCTGTCCCTAACCAGTTCAATGAGGGTCGTTGGTCAGAGAGCAACGGGAATGACTGGATGGAAT CTCGAATGCAGCAGCTGCAAATCAATGCTGAGCGTAAGAAAAGAGAGACAGAAGTCAAAATGGCTGCTGAGAACCCCAGCTTATGGATGTCAGATGGAAT GAACGAGGACAAGTCAAGGCAACTGCTGATGGAGCTGCTTCATCATAATTCAGGCCATCAATCTGCAGATTCCCTACACATGCACGATGCCAGATCTTTC GACAGAACTTCCCAGTCCAGCCATCACTCAGCTTCAGCAGCCTCCGATCTCACTTATATCGTTGGTGCCGACCAGGACCCTTCTCTGAACAGCTCGTTTG CAATAGGCTCATATGGGTCTCATAATGCACGTGAAACCTCAGACCTTATTGCAGCTGAGAACCAGGGTATAGCCCTGGACGGCAGTGCCAAATGGCCTTA TAGGTCAGAATCGTTGACCGGAGGACGGAGAACTTTTTCTGGCATTGGTGAGGCTCCCCAAGGTGCAGCAGCCTATTCAGATCGGAATATGATGAGAGGT TCGTTTTTAGACATCCAGGATGGTATGGCTGAACAGGCACGATTGGGCGCTACAGATCATTTAGAGATGCCAGTTAATCCTCTCAGCAGACACTCATCAA TGGGCGTTGGTGGATTTTACGATGACAGTGTTGGACAAAGAGCCGAAGACATGCATTTAAATCAAATATCGGCAGCAGCACCTAAGGCGCAAGAAACCGT CTTGCTGAGACGCCCACCGCCATTTCGTTCATCATCATCCCACGAAGGTGGCCTAAGCAGCATCGACGTAGCCAACCCAGCAAACCAGAGTTCAGACAAG AGGTTCAGGAGAACCTCTTCTTATGGAGACAATGAGGTATCAGAGCCGTCATTCATCGACATGCTGAAGAGCAACTCGAAGAAAGGCGGCGGCCAGGAAA TGGCGATGCAGCAGCAGCAGCAAGGGACAGGCATTGCAGCAGAAGCAATGGAAAGTGGGCAAGTTGGGAAAAGTGGGAAGAAGAAAGGCAAGAAAGGGAA GCAAATAGACCCAGCGCTACTTGGTTTTAAAGTCACGAGTAACCGCATTATGATGGGTGAAATCCAACGCTTTGATGATTAG
AA sequence Show only first row Show all	>Lus10003139 pacid=23169995 polypeptide=Lus10003139 locus=Lus10003139.g ID=Lus10003139.BGIv1.0 annot-version=v1.0 MAERKLDLPDDLLSSKQSDHSAHPKGLAGIDVDKFHGGSQDQLAADSTIPLSPQWLYTKPSETKMDVRSPTAVSQAVVDPGQKDTWRLDGTEDRKDWRRI ANENESNRKWREEERDTALLGARRERRKVDRRVDAVREVTDNKPVASSERWNDGGNRNAATETRRDNKWSSRWGPEDKDKDSRIEKKTDLEKEKNDIDNE NQASIGSNRIASERESDSRDKWRPRHRMEVHSSTPSSYRAAPGFGPERGRLEGSNTGFAVGRGRSSATGRSVPIGATPLYISESFIGKPAMLIATFCYPR GKLLDIYRRQKLDLSFGNMPENMEESPSITLVSCTGPLALVTPDADEESVLTDIREGKITSSEVVYNSSSRKEGLNENSSAGVDISSSGGKLDTLNSTIV KDSAGTFQDPAFGHGNQYNDAMLLSSQGLDKDDISQEVEGRRVTDVIRSDGINGIKTDSSVDQHDQFVQEIEANLPDDPNSLFNIPSFERNIASNGEESA IPPEDLYFCYIDPEGNTQGPFLGADIVMWFEEGYFGTELPVRLADAPEGTPFQHLGEVIPQLKYKEASETEQPVTMGNGTSEFDASLSMASGPETTQSAM KTYGQSLIHHNATSEIEDPSKRASINAQNFHDLSVQDEEIVFPGRPDSTSLPLVASSGSLRLPGSNSDPSLADQLTDPSLTNQTDSKLHPFGLFWSELEG STARQPTKPEVHKTTSFSALSDPAPEKWSSIYRQDSASGPNVLQDSISNHRFSLLEQEHNQLGLAEQLMSRQIQQQNILSPHTLMNEPPMERGHSQNLIH QQLMGHSTPDMEHILALQLQQQRQLQRQDRQQQLQQQFQQQQQLQQQQKLLQERQQSQLRQVLLEQLLHGQVPDHGHPQSRVDHIRANSILEQVILEQQL QQELQQRPHPSRHFQPSMEHLAQAKLGQTMQQEQQRDLFELLSRAQHGQIQNLEQQFIRQEQIQAMQLAMGLRPQTNVEEERLHDSMWPVNENDQFMRSL SSNQRNHSSGMNPLDLYQRQHMQRHEEQQLSHLDRTISFQDRLRQGLFETGATPFERSISMPPGASGMNMDVVNAVGHPHRSELPEFAPRVQSSGHLGAF TSNAHSQNPHHPAVPNQFNEGRWSESNGNDWMESRMQQLQINAERKKRETEVKMAAENPSLWMSDGMNEDKSRQLLMELLHHNSGHQSADSLHMHDARSF DRTSQSSHHSASAASDLTYIVGADQDPSLNSSFAIGSYGSHNARETSDLIAAENQGIALDGSAKWPYRSESLTGGRRTFSGIGEAPQGAAAYSDRNMMRG SFLDIQDGMAEQARLGATDHLEMPVNPLSRHSSMGVGGFYDDSVGQRAEDMHLNQISAAAPKAQETVLLRRPPPFRSSSSHEGGLSSIDVANPANQSSDK RFRRTSSYGDNEVSEPSFIDMLKSNSKKGGGQEMAMQQQQQGTGIAAEAMESGQVGKSGKKKGKKGKQIDPALLGFKVTSNRIMMGEIQRFDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27430			GYF domain-containing protein ...		Lus10003139 [exp]	0	1
AT1G27430			GYF domain-containing protein ...		Lus10011331 [exp]	1.0	0.9713
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	2.0	0.9639
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10010729 [exp]	2.2	0.9635
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	4.0	0.9577
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10036354 [exp]	4.5	0.9712
AT3G61690			nucleotidyltransferases (.1)		Lus10004018 [exp]	4.5	0.9560
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	4.6	0.9671
AT5G01730		ATSCAR4, WAVE3	SCAR family protein 4 (.1)		Lus10029437 [exp]	8.1	0.9416
AT3G22380		TIC	time for coffee (.1.2)		Lus10002448 [exp]	8.3	0.9454
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	8.7	0.9400

Compare expression of checked genes

Lus10003139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.