Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02000 71 / 2e-16 ROXY1 Thioredoxin superfamily protein (.1) AT5G14070 71 / 3e-16 ROXY2 Thioredoxin superfamily protein (.1) AT3G21460 62 / 2e-13 Glutaredoxin family protein (.1) AT4G33040 61 / 1e-12 Thioredoxin superfamily protein (.1) AT2G47870 58 / 1e-11 Thioredoxin superfamily protein (.1) AT3G62950 54 / 2e-10 Thioredoxin superfamily protein (.1) AT4G15660 54 / 4e-10 Thioredoxin superfamily protein (.1) AT4G15670 52 / 1e-09 Thioredoxin superfamily protein (.1) AT2G47880 52 / 2e-09 Glutaredoxin family protein (.1) AT3G62960 52 / 2e-09 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011333 [exp] 180 / 5e-59 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 72 / 8e-17 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 66 / 6e-15 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 66 / 6e-15 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 66 / 2e-14 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10012815 [exp] 64 / 5e-14 AT3G21460 171 / 3e-57 Glutaredoxin family protein (.1) Lus10040899 [exp] 58 / 9e-12 AT2G30540 140 / 5e-45 Thioredoxin superfamily protein (.1) Lus10023295 [exp] 59 / 1e-11 AT5G14070 123 / 5e-37 Thioredoxin superfamily protein (.1) Lus10005937 [exp] 57 / 3e-11 AT2G47880 138 / 7e-44 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G060600 [exp] 91 / 3e-24 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 88 / 2e-23 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 86 / 2e-22 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 64 / 5e-14 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 64 / 5e-14 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1) Potri.006G226900 [exp] 58 / 2e-11 AT4G33040 184 / 8e-61 Thioredoxin superfamily protein (.1) Potri.014G134300 [exp] 57 / 2e-11 AT2G30540 157 / 1e-51 Thioredoxin superfamily protein (.1) Potri.002G208400 [exp] 57 / 2e-11 AT2G30540 160 / 8e-53 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 56 / 9e-11 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 54 / 4e-10 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10003141 pacid=23170010 polypeptide=Lus10003141 locus=Lus10003141.g ID=Lus10003141.BGIv1.0 annot-version=v1.0 ATGTATACACAGCAGTACTACCCCGACCTTCACCATTATCGCTACAACCCCTCCTCGGACCACCACCACCACCATCAGATGAAGCAGCCAGCATACTACG ATGCCGCAGTGCCAGACCCGCTGGAGAAGGTGGCGAGGCTGGCGGCGGAGAGCGCGGTGGTGATATTCAGCCTCAGCACGTGCTGCATGTGCCATGCTGT CAAGCGGCTCTTTTGCAGCATGGGAGTCAGCCCCAACGTGATAGAGCTCGACAACCACCCACGTGGCAGGGAGCTTGAACGCGCATTGCTCCGCCTCCAC GACGTTACCAATACTACAAGCTACGGCGGCACGCGACGTCACCAACACTACCAGCTACGGCGGAGCAGCGTCATCCGCCGTTCCATTGGTTTTCATCGGC GGGAAGCTCATCGGAGCGATGGATAG
AA sequence Show only first row Show all	>Lus10003141 pacid=23170010 polypeptide=Lus10003141 locus=Lus10003141.g ID=Lus10003141.BGIv1.0 annot-version=v1.0 MYTQQYYPDLHHYRYNPSSDHHHHHQMKQPAYYDAAVPDPLEKVARLAAESAVVIFSLSTCCMCHAVKRLFCSMGVSPNVIELDNHPRGRELERALLRLH DVTNTTSYGGTRRHQHYQLRRSSVIRRSIGFHRREAHRSDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10010533 [exp]	4.6	0.9654
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	5.7	0.9750
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	5.7	0.9671
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	8.3	0.9344
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	8.9	0.9747
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10011333 [exp]	9.0	0.9744
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	9.8	0.9649
AT1G31310	Trihelix		hydroxyproline-rich glycoprote...		Lus10040629 [exp]	9.8	0.9744
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	13.9	0.9727
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	14.1	0.9736

Compare expression of checked genes

Lus10003141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.