Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13170 273 / 3e-91 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT5G23660 236 / 6e-77 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT3G48740 233 / 8e-76 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G50800 231 / 7e-75 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT5G50790 219 / 2e-70 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT4G25010 218 / 5e-70 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT2G39060 189 / 3e-59 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G15920 175 / 7e-54 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 154 / 1e-45 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1) AT1G21460 130 / 2e-36 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011335 [exp] 459 / 4e-165 AT5G13170 268 / 1e-89 senescence-associated gene 29 (.1) Lus10015754 [exp] 357 / 2e-124 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10000310 [exp] 357 / 3e-124 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10023249 [exp] 212 / 4e-68 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10024770 [exp] 213 / 5e-68 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 212 / 2e-67 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1) Lus10008861 [exp] 211 / 2e-67 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10005935 [exp] 207 / 2e-65 AT5G50800 235 / 3e-76 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 207 / 2e-65 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G166800 [exp] 259 / 4e-86 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.001G060900 [exp] 247 / 2e-81 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 237 / 2e-77 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.015G101500 [exp] 207 / 6e-66 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.015G101400 [exp] 207 / 9e-66 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 205 / 5e-65 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 204 / 2e-64 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.019G030500 [exp] 186 / 7e-58 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.013G013900 [exp] 165 / 5e-49 AT4G15920 205 / 4e-65 Nodulin MtN3 family protein (.1) Potri.013G013800 [exp] 155 / 2e-45 AT4G15920 214 / 3e-69 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10003143 pacid=23169992 polypeptide=Lus10003143 locus=Lus10003143.g ID=Lus10003143.BGIv1.0 annot-version=v1.0 ATGCACTCCACCGGAGCCTTCGTTTTCGGCATATTAGGTAATGTTATCTCCTTCATGGTGTTCCTTGCTCCGGTACCGACGTTCTGGCAGATACACAAAA AGAAGACAAGTGAAGGGTACAAATCCCTCCCTTACCTAACCGCATTGTTCAGCTCGATGCTCTGGCTTTACTACGCGCTCCTTAAAAAGGAAGACGCGTT CCTTCTTATGACGATCAACTCCTTCGGGTGCGTCATCGAGACCATCTACTCCGCCATCTTCATCGCCTACGCTCCCAAGAAGATGAGGATGTGGACGATC CTTCAGTTTGTTGGCTTGAACGTCGTCTTGTTCTCCGGGATTCTTCTGGTTATACAGTTCTTGGTGGTCGGCGAAAATCTAAAGGTGTCTATTTTGGGGT GGTTCTGCGTTGCCTTCGCCGTCATTGTCTTTGCCGCACCGTTGAGTGTTATGGCGACGGTGATTAAAACGAGGAGTGTGGAGTATATGCCATTTTCGCT CTCATTCTTCTTGACGTTGAGCGCGGTGGTTTGGTTTGGATACGGAGCGTTTATTGAAGATCTTCGTGTTGCGCTTCCAAACGTGCTAGGATTTGTGTTT GGGCTGGTCCAGATGATTCTGTACGGGATTTACAGGAACAAGAAGCCCGTGGCTGGGCCCATGGACGACATCGAGAAGGAGAAGGAGAAAAACCTTCAGC TTGAGAATCAGAAGTTGCCGGTGAAGATGAAGAGCATCCACCGGAGGAGCGGCCTGGGGACGCCGGAAGTTCATCCTTTCGAAGGGAAAGATGCTCGCCG CGCCGACGACGAAAGTGACCATGAGACCAAGATGACTGCAGGAAGGAGAAGCTTTGATGATTCCCCTGTTTGA
AA sequence Show only first row Show all	>Lus10003143 pacid=23169992 polypeptide=Lus10003143 locus=Lus10003143.g ID=Lus10003143.BGIv1.0 annot-version=v1.0 MHSTGAFVFGILGNVISFMVFLAPVPTFWQIHKKKTSEGYKSLPYLTALFSSMLWLYYALLKKEDAFLLMTINSFGCVIETIYSAIFIAYAPKKMRMWTI LQFVGLNVVLFSGILLVIQFLVVGENLKVSILGWFCVAFAVIVFAAPLSVMATVIKTRSVEYMPFSLSFFLTLSAVVWFGYGAFIEDLRVALPNVLGFVF GLVQMILYGIYRNKKPVAGPMDDIEKEKEKNLQLENQKLPVKMKSIHRRSGLGTPEVHPFEGKDARRADDESDHETKMTAGRRSFDDSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	0	1
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	1.0	0.9538
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	1.7	0.9287
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	2.0	0.9213
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031350 [exp]	2.2	0.9181
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	2.4	0.9161
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	3.0	0.9083
AT4G39480		CYP96A9	"cytochrome P450, family 96, s...		Lus10018161 [exp]	3.2	0.9295
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	3.5	0.9063
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	3.7	0.9122
AT3G45790			Protein kinase superfamily pro...		Lus10013791 [exp]	4.7	0.9068

Compare expression of checked genes

Lus10003143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.