Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25150 353 / 8e-117 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G60980 257 / 4e-80 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT5G48650 229 / 1e-69 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT1G13730 192 / 8e-56 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) AT2G03640 170 / 3e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain AT5G43960 168 / 1e-46 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT1G69250 166 / 4e-46 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) AT3G07250 96 / 2e-20 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G55540 71 / 3e-13 nuclear transport factor 2 (NTF2) family protein (.1) AT1G27310 56 / 2e-09 NTF2A nuclear transport factor 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022765 [exp] 685 / 0 AT3G25150 408 / 1e-138 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10025906 [exp] 498 / 2e-170 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10036918 [exp] 205 / 3e-60 AT2G03640 250 / 4e-78 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10037066 [exp] 205 / 7e-60 AT2G03640 248 / 2e-77 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10022873 [exp] 172 / 7e-48 AT5G43960 377 / 1e-127 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10004644 [exp] 140 / 2e-36 AT2G03640 253 / 2e-79 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Lus10023722 [exp] 141 / 3e-36 AT5G43960 266 / 2e-83 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10014469 [exp] 133 / 3e-34 AT5G43960 156 / 4e-43 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10024953 [exp] 81 / 2e-17 AT5G43960 159 / 8e-47 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246600 [exp] 424 / 2e-144 AT3G25150 374 / 8e-125 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.015G058700 [exp] 266 / 2e-83 AT5G60980 382 / 9e-129 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.017G094600 [exp] 261 / 1e-81 AT5G60980 286 / 6e-92 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.008G096700 [exp] 198 / 7e-58 AT2G03640 219 / 3e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain Potri.002G257000 [exp] 180 / 4e-51 AT5G43960 402 / 3e-137 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.014G192900 [exp] 171 / 1e-47 AT5G43960 392 / 3e-133 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G065500 [exp] 168 / 1e-46 AT5G43960 310 / 3e-101 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Potri.010G157800 [exp] 134 / 4e-34 AT1G13730 219 / 4e-66 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1) Potri.011G025500 [exp] 59 / 3e-10 AT1G11570 171 / 5e-56 NTF2-like (.1.2) Potri.003G170800 [exp] 56 / 1e-09 AT1G27970 230 / 1e-79 nuclear transport factor 2B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10003144 pacid=23147778 polypeptide=Lus10003144 locus=Lus10003144.g ID=Lus10003144.BGIv1.0 annot-version=v1.0 ATGGAGAAATGTTGGTCGTTAGGGTTTGACGGAATTGTGTTCGATTGCAATTGTCAGATATTCGGAGCAGTTGTCATGGCAGAACTCGTGCAGCAGCCTG TGACTCCTCCTGCTGATGTTGTTGGCAATGCCTTTGTTCATCAATATTACCACATCTTGCGCCAGTCTCCGGAGCTTGTCCATCGATTTTACCAGGAGAA TAGTAAGCTTGGCCGCCCTGAAGGGAACGGTATCATGAGTACCACCACCACGATGCTTGCCATTAACGCGAAGATACTCGCACTTGTTCATGGAGATTTC AAGGTTGAAATTCTTACTGTGGACTCGCAAGAATCTTATGAGGGTGGAGTCCTAGTTCTCGTGACAGGATATCTGACCAGAAATGGGGACGTCCGTGATA AGTTTACTCAGAGTTTCTTCTTGGCACCTCAAGAAAATGGCTATTTCGTCTTGAATGATGTATTCCGATATGTGGATGAAGTGAAGGTTCAAAATGGAAA CCCAGATACAGTCGATGATATGAAAGTTCCAGCTACTGCTGAAGACGATTCTTTGCTTGTTATGGAAAATAACGTCCCTGAGCCAGTAGCCACTTTACCC GAGCAAGTCAGTGAAGTTGAAGCTCATGACACATCTGGCAGTGGAGATGCTCCAGTTGAAGAGGAGGAAGAACCAGTGCCTGAAGTTATTGATGCAGCTC CTGAAGAGTCGGAAAGGGCAATTGATCCTCAAGTGGTCTCTGAATCGGATGCAAAGATTGGGGATGCACCTAAGAAGTCATATGCTTCCATTGTGAAAGT CATGAAGGAGAATGCTGCACCATTCTCAACACCGGCCGCTTCTCCACTGAGATCAGTTTCAAGGAATCAAGAACAATTGCCTGCCTCAGCACCTCCACCT CAAGTATCTGAGCCACATGCCTTGAACTCGAATGAGATCGAAAACCAGAGTACCCAAGACACCGAAGCCGTATCTGAGGGACCTTCCATCTACCTGAAAG GGTTGCCTTTTGATGCCACCTCTGCCTTGCTTGAGAACGAGTTCAAGAAGTTCGGGACTATTAGGGCTGGTGGTATTCAAATCAGGAACCAAAAGGGATT TTGCTTTGGATTTGTGGAATTTGAGGCTGCCGGTGCTGTGCAAAGTGCAATTGAGGCTTCACCTGTCATGATTCATGGGTGGCGAGTTGTAGTAGAGGAA AAGAGATCTACGTTTCGAGGAAACAGTAGGGGTCGCTCTTCTGCAGGATCCGGATACCGAAACGAAGGAGTTAGAGGTCGCGGAGGCTATGGAGGAGGAA GATCTTATGGCCGAGGCGGTGGCAGCGATCACGGTAGCAGGAACGTTAGTCGTGGCGGCGGGTTCTCGAACCGTGGTGGCGAAGGTTTTCGTAGGTCCGA CAAGACAACCAATAGCAACGGTGGTGGGCGTACCAGCCGTTCCGGAGGTCCGGCCATGAATGTAGCTGGAGGCACCGCGCCGCATGTGTCTGCTACAGCT TGA
AA sequence Show only first row Show all	>Lus10003144 pacid=23147778 polypeptide=Lus10003144 locus=Lus10003144.g ID=Lus10003144.BGIv1.0 annot-version=v1.0 MEKCWSLGFDGIVFDCNCQIFGAVVMAELVQQPVTPPADVVGNAFVHQYYHILRQSPELVHRFYQENSKLGRPEGNGIMSTTTTMLAINAKILALVHGDF KVEILTVDSQESYEGGVLVLVTGYLTRNGDVRDKFTQSFFLAPQENGYFVLNDVFRYVDEVKVQNGNPDTVDDMKVPATAEDDSLLVMENNVPEPVATLP EQVSEVEAHDTSGSGDAPVEEEEEPVPEVIDAAPEESERAIDPQVVSESDAKIGDAPKKSYASIVKVMKENAAPFSTPAASPLRSVSRNQEQLPASAPPP QVSEPHALNSNEIENQSTQDTEAVSEGPSIYLKGLPFDATSALLENEFKKFGTIRAGGIQIRNQKGFCFGFVEFEAAGAVQSAIEASPVMIHGWRVVVEE KRSTFRGNSRGRSSAGSGYRNEGVRGRGGYGGGRSYGRGGGSDHGSRNVSRGGGFSNRGGEGFRRSDKTTNSNGGGRTSRSGGPAMNVAGGTAPHVSATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	0	1
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031786 [exp]	1.0	0.9283
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10008634 [exp]	1.4	0.8941
AT3G25150			Nuclear transport factor 2 (NT...		Lus10025906 [exp]	5.7	0.8465
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10040316 [exp]	6.0	0.8857
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	10.4	0.8689
AT2G35790			unknown protein		Lus10040379 [exp]	11.0	0.8782
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	11.8	0.8620
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10004113 [exp]	14.0	0.8780
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	14.0	0.8786
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	14.6	0.8935

Compare expression of checked genes

Lus10003144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.