Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29575 111 / 6e-29 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 111 / 1e-26 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 99 / 3e-23 AFP2 ABI five binding protein 2 (.1) AT1G69260 98 / 7e-23 AFP1 ABI five binding protein (.1) AT3G02140 85 / 1e-18 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT4G28910 66 / 1e-11 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022764 [exp] 487 / 6e-174 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10036898 [exp] 108 / 4e-27 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10037084 [exp] 104 / 1e-25 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1) Lus10004645 [exp] 101 / 2e-24 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 101 / 3e-24 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10043236 [exp] 63 / 1e-10 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 62 / 3e-10 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 110 / 1e-27 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.008G096500 [exp] 104 / 2e-25 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 102 / 2e-24 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 96 / 4e-22 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 62 / 2e-10 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 60 / 8e-10 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10003145 pacid=23147785 polypeptide=Lus10003145 locus=Lus10003145.g ID=Lus10003145.BGIv1.0 annot-version=v1.0 ATGGCGATGATCGAGGAGGAACCGATTGAGCTCGAGCTGGGCCTTTCTCTCGGCGGGAATTACGCTACTACCCCCCGCCGTACTACGCTCCAGAAATCCG GACCCGGGTCGGCCGATTTGGGATCTGGGTTTTCCGGCACGGAGGATTTGAAGAACAAACGGGAGGTTAATGCGTTGAGGAGGCTGGAGGCTAGGAAGAA GAGGGACGAGAAGCAGCTGAAGAGAACTCTTTCCAAGGGGATCCTCGCCGGCGGCTGTTCTCCGGCGAGTTTCGCCGTTTATTTGAGCAACGGCGGAGGA GAGGGGCCGGAATACAAGAGGAGCAAGCTTGGAATTGTGAGGTCGGATTCGGGTTCCTGTCCCAACCCGGATGATCTGCAGCTGGGTTTTGGGCAAAACG GTGTAACGGCGCCGTCATGGTTCGCCGCCGTCGGCGGTGGGACGGAGAGGAGCGTGGTTCGGCCGGTGGCGAGGTTTGGGTTCAGGGGTTCGTTTCGGAA TGATTCGGAGCAGAATGGAGGCGCGGTGGTCCGGTCAAATGGTTCGACCGTTTGTTCGTCCGGTTCGGATAACCGGAGTTCTTCTCGTGATGGTGGTGGC AGCATTGAGAGCAGAAGCAATTCGATACAGTCAGTTCCAGTCCTCGAACAGTCGATTACATTCGCAAAGGAAGAATCCAAGTCGGACAACGAAGGGACGA ACAACACATCAAGCATCGAGAATCCAGAGCGGCCCACCGGATCGAAGGAAATCAATCAAGGCAAGCTTATCCCTGCCAAGAATAATGTTCTGAACCAGAA TCAGAACCCCGGTGCTGCATTGCCATACATGCCCTGCGTTTCGACAACAGGGAACGGTCTGAATGGGAAGACGGTACACGGGTTTCTGTACCGGTACGCG AAAGGGGAAGAGGTGAGCATTGTTTGCGTCTGCCATGGAAGCTCGTTCTCTCCTGCGGAGTTCGTGCAGCATGCTGGAGGCGTCGATGTCTCGAATCCTC TGAGGCATATAACAGTCGTTCCATCTGCATTTTGA
AA sequence Show only first row Show all	>Lus10003145 pacid=23147785 polypeptide=Lus10003145 locus=Lus10003145.g ID=Lus10003145.BGIv1.0 annot-version=v1.0 MAMIEEEPIELELGLSLGGNYATTPRRTTLQKSGPGSADLGSGFSGTEDLKNKREVNALRRLEARKKRDEKQLKRTLSKGILAGGCSPASFAVYLSNGGG EGPEYKRSKLGIVRSDSGSCPNPDDLQLGFGQNGVTAPSWFAAVGGGTERSVVRPVARFGFRGSFRNDSEQNGGAVVRSNGSTVCSSGSDNRSSSRDGGG SIESRSNSIQSVPVLEQSITFAKEESKSDNEGTNNTSSIENPERPTGSKEINQGKLIPAKNNVLNQNQNPGAALPYMPCVSTTGNGLNGKTVHGFLYRYA KGEEVSIVCVCHGSSFSPAEFVQHAGGVDVSNPLRHITVVPSAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29575		AFP3	ABI five binding protein 3 (.1...		Lus10003145 [exp]	0	1
AT3G63480			ATP binding microtubule motor ...		Lus10035344 [exp]	7.0	0.8876
AT3G54200			Late embryogenesis abundant (L...		Lus10018361 [exp]	8.4	0.8751
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	11.1	0.8843
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	15.2	0.8582
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	19.1	0.8799
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	23.6	0.8758
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	25.2	0.8580
AT3G63480			ATP binding microtubule motor ...		Lus10035343 [exp]	27.3	0.8697
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	28.2	0.8680
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	28.5	0.8613

Compare expression of checked genes

Lus10003145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.