Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25160 388 / 2e-137 ER lumen protein retaining receptor family protein (.1) AT1G19970 327 / 2e-113 ER lumen protein retaining receptor family protein (.1) AT1G75760 326 / 6e-113 ER lumen protein retaining receptor family protein (.1) AT4G38790 323 / 1e-111 ER lumen protein retaining receptor family protein (.1) AT2G21190 320 / 3e-110 ER lumen protein retaining receptor family protein (.1) AT3G25040 106 / 9e-28 ERD2B endoplasmic reticulum retention defective 2B (.1) AT1G29330 100 / 4e-25 ATERD2, AERD2, ERD2 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022763 [exp] 498 / 0 AT3G25160 355 / 8e-125 ER lumen protein retaining receptor family protein (.1) Lus10038198 [exp] 423 / 4e-151 AT3G25160 362 / 4e-127 ER lumen protein retaining receptor family protein (.1) Lus10025906 [exp] 404 / 1e-137 AT3G25150 363 / 4e-118 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.1), Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (.2) Lus10017213 [exp] 326 / 1e-112 AT1G75760 481 / 5e-174 ER lumen protein retaining receptor family protein (.1) Lus10021097 [exp] 323 / 2e-111 AT1G75760 475 / 8e-172 ER lumen protein retaining receptor family protein (.1) Lus10026285 [exp] 319 / 4e-110 AT4G38790 473 / 7e-171 ER lumen protein retaining receptor family protein (.1) Lus10007570 [exp] 313 / 1e-107 AT4G38790 466 / 2e-168 ER lumen protein retaining receptor family protein (.1) Lus10012176 [exp] 260 / 2e-86 AT2G21190 397 / 2e-140 ER lumen protein retaining receptor family protein (.1) Lus10042389 [exp] 227 / 4e-74 AT2G21190 355 / 5e-125 ER lumen protein retaining receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246700 [exp] 396 / 1e-140 AT3G25160 400 / 5e-142 ER lumen protein retaining receptor family protein (.1) Potri.002G022300 [exp] 329 / 5e-114 AT1G75760 464 / 2e-167 ER lumen protein retaining receptor family protein (.1) Potri.004G167400 [exp] 329 / 7e-114 AT4G38790 472 / 1e-170 ER lumen protein retaining receptor family protein (.1) Potri.009G128900 [exp] 328 / 1e-113 AT2G21190 476 / 2e-172 ER lumen protein retaining receptor family protein (.1) Potri.017G056000 [exp] 115 / 3e-31 AT3G25040 383 / 3e-137 endoplasmic reticulum retention defective 2B (.1) Potri.001G315800 [exp] 115 / 4e-31 AT3G25040 355 / 3e-126 endoplasmic reticulum retention defective 2B (.1) Potri.011G071200 [exp] 84 / 4e-19 AT1G29330 341 / 1e-120 ARABIDOPSIS THALIANA ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ARABIDOPSIS ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2, ER lumen protein retaining receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF00810 [flax] [poplar] ER_lumen_recept ER lumen protein retaining receptor
Representative CDS sequence Show only first row Show all	>Lus10003146 pacid=23147799 polypeptide=Lus10003146 locus=Lus10003146.g ID=Lus10003146.BGIv1.0 annot-version=v1.0 ATGGGTTCGAAGAGGAACGCTATGGGGGGCGGAGGATCGTCGCCGCCGGCGGTGAAGGCGGTGGTCGGGTGGATCAGCCGGCAGTCGACGAGGGTGAAGG TGATTATGGCGGTGGCGATTGCGGTTTTGACGCTTGTGGCGATGAAGCTCTGTGTTAGGAATCATAACCATTTCTTCATCGCATCCGAGGCCATTCACGC CGCCGGGATCATCGTTCTTGCTTACAAGCTCATCACCAAGAAAACCTGCTCCGGGCTTTCACTGAGGAGTCAGGAGCTGACAGCATTGTTCCTAGCAGTG AGGCTGTGTTGCAGCGTGTTCATGGAGGCAGACATCCACACCATGCTTGATTTCGCCACCCTCGCTTCGACCCTTTGGGTTATCTACATGATGAGGTTCA AGTTGAAGTCCTCCTACGTCAAGGAGCTCGACAACTTGAACGTCATCTATCTGGTTGTCCCTTGTCTTGCCCTTGCATTCATTGTCAAGCCACATACTTT GTACGGCTTCTTCAGCGAATTCCTCTGGGCGTTCTGCGCCTACCTCGAAGCTGTCTCTGTCCTACCACAGTTGCGAATGATGCAGAATGCCAAGATGATC GAGCCTTTCACGTCTCATTATGTATTCGCGCTGGGGGTGGCGAGATTCCTGTCCTGTGCACATTGGATCATCCGGGTGATCGAGACCCGTGGAGCGTACC TATATATAACGGGGAGCGGGTACTTCTGGTTCCCGGTGGCGTTCCTGGCGGAGATGGTCCAGACGTTCATCTTGGCTGATTTCTGCTACTATTACGTGAA GGGTTTCATGGCAGGGCAGCTTGTGATGAGGATGCCTGTTTAG
AA sequence Show only first row Show all	>Lus10003146 pacid=23147799 polypeptide=Lus10003146 locus=Lus10003146.g ID=Lus10003146.BGIv1.0 annot-version=v1.0 MGSKRNAMGGGGSSPPAVKAVVGWISRQSTRVKVIMAVAIAVLTLVAMKLCVRNHNHFFIASEAIHAAGIIVLAYKLITKKTCSGLSLRSQELTALFLAV RLCCSVFMEADIHTMLDFATLASTLWVIYMMRFKLKSSYVKELDNLNVIYLVVPCLALAFIVKPHTLYGFFSEFLWAFCAYLEAVSVLPQLRMMQNAKMI EPFTSHYVFALGVARFLSCAHWIIRVIETRGAYLYITGSGYFWFPVAFLAEMVQTFILADFCYYYVKGFMAGQLVMRMPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	0	1
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	1.4	0.9497
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016919 [exp]	2.0	0.9286
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10000311 [exp]	6.5	0.9124
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	8.2	0.9191
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	8.4	0.9123
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10010293 [exp]	9.7	0.8923
AT5G61510			GroES-like zinc-binding alcoho...		Lus10009658 [exp]	9.8	0.9194
AT5G41350			RING/U-box superfamily protein...		Lus10024635 [exp]	10.4	0.8744
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	12.0	0.8988
AT3G25570			Adenosylmethionine decarboxyla...		Lus10031919 [exp]	12.2	0.9020

Compare expression of checked genes

Lus10003146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.