Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 406 / 3e-137 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 400 / 6e-135 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 375 / 5e-125 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 333 / 4e-109 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 305 / 8e-98 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 252 / 1e-77 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37320 244 / 1e-74 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37310 231 / 2e-69 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37330 229 / 2e-69 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37340 226 / 1e-67 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022762 [exp] 914 / 0 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003148 [exp] 640 / 0 AT4G31940 430 / 3e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10002357 [exp] 637 / 0 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 531 / 0 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 527 / 0 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025901 [exp] 409 / 5e-138 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 403 / 9e-136 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10025904 [exp] 403 / 2e-135 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038178 [exp] 385 / 6e-129 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 478 / 3e-165 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 438 / 8e-150 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 399 / 2e-134 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 374 / 6e-125 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037300 [exp] 373 / 1e-124 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 372 / 2e-124 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 373 / 3e-124 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.004G106600 [exp] 372 / 5e-124 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037700 [exp] 370 / 3e-123 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 364 / 8e-121 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10003147 pacid=23147782 polypeptide=Lus10003147 locus=Lus10003147.g ID=Lus10003147.BGIv1.0 annot-version=v1.0 ATGGATCTTGCTTCAATACTCTTCATACTCTCAGGATTCCTCTTCCTTCACTTCCTCCGAACCCTTGTCTCGACTCGAACCCAGAAAGAGAAGCTCCCGC AAATACCTGAAATCCCAGGCGCTTTGCCCTTCGTAGGCCACCTCCACCTCCTCGGAGGCAAAGACACGCTAGCGAGGAAGTTGGGTGCCTTTGCTGACAA ACACGGCCCCATGTTCACAATCCGGCTGGGTTCCTATCCGACCGTGATTGTGAGTGATGAGGAGTCTATGAAAGACTGCTTTGTGAAAAACGACAAAGCA CTGGCTGCTCGCCCTCCCTCCACCCAGGGCAAGATCCTGGGCAAGAACTTTGCGGTCTTCGGGATTAGAGCCATGAGGCACGTCCAGGTCTCGGAGGTGG ACGTGCTGATCAAGGACCTGAACTCCCAGTGCCTTGTGGGGTCCGACAGTCGTGGTCAGGTGGTGATCAGCGATTGGCTGCAGAACTTCGTGTTGAACAT CATCACGAGGATGGTCGCGGGGAGGAAGTACTTCGAGAACTTGGCAGACAGCATTGGGACCGCTGACGTGGGGGGAAGGCCAGTCGGGGAGCTCATTAGG GAGTTCATGGACGTGAATGGCTCGCTCGTGTTGTCGGATTTGATCCCGAGTCTAGGGTGGATCGACATCAAGGGGATGAAGAAGTCCATGAAGAGGATCT CCAAGGAGTTGGATGTCATCATTGATGGTTGGATTGAAGAACATAAAGTGAAGAGGAGTAAATTGGGTGACAATTGGGTTGCTGAAGATTTCATTGATGT CATGCTCTCTGTTATTGATGACAACTTTGACCCCACCGGTCAACACGACAAGGAAACCATCATCAAGTCAACTGCTATGGCTGTGATCATCGCTGCAGCT GACACAACATCCGTAACCTTAACATGGATGCTATCAAACCTCCTCAACAACCGCCGAGCCCTAACTCTCCTCCAGCAAGAAATCGACACAAAAGTCGGGA AAGACAGAATCGTGCAGGACTCCGACCTTGAGAACCTCACCTACCTCCATGCGGTGATTCGCGAGACCCTCAGAATGAATCCTGCGGGACCCATCTCGGT CCCGCGTGTGGCTTCTGAGGACATCACCATTCGCGGTTATCACGTGCCTAAAGGCACGAGGTTCTTCGCGAACTTCTGGAAGCTCCACAGGAACCCGGAG ATGTTCCCGGAGCCCAACGAGTTCCGGCCCGAGAGGTTCCACGACAAGGAGGTGAAGGTGGACATATACGGGAGGGACTTCGAGTACTTGCCGTTTGGGA CCGGAAGGAGGTCGTGCCCCGGGATGAACTTCGGGATGGAAGTTGTGCAGTTGACGGCGGCGAGGCTGTTGCAGGCGTTTGACTTCGGGACACCGTTTGA CTTGCCGGTGGACATGACGGAGGCGGATAGTACGACGTTGGCTAAGGAGAAGCCGTTGGAAGTTGTGCTTAGGCCACGACTTTCGCCTGAGCTCTATATT AATTAA
AA sequence Show only first row Show all	>Lus10003147 pacid=23147782 polypeptide=Lus10003147 locus=Lus10003147.g ID=Lus10003147.BGIv1.0 annot-version=v1.0 MDLASILFILSGFLFLHFLRTLVSTRTQKEKLPQIPEIPGALPFVGHLHLLGGKDTLARKLGAFADKHGPMFTIRLGSYPTVIVSDEESMKDCFVKNDKA LAARPPSTQGKILGKNFAVFGIRAMRHVQVSEVDVLIKDLNSQCLVGSDSRGQVVISDWLQNFVLNIITRMVAGRKYFENLADSIGTADVGGRPVGELIR EFMDVNGSLVLSDLIPSLGWIDIKGMKKSMKRISKELDVIIDGWIEEHKVKRSKLGDNWVAEDFIDVMLSVIDDNFDPTGQHDKETIIKSTAMAVIIAAA DTTSVTLTWMLSNLLNNRRALTLLQQEIDTKVGKDRIVQDSDLENLTYLHAVIRETLRMNPAGPISVPRVASEDITIRGYHVPKGTRFFANFWKLHRNPE MFPEPNEFRPERFHDKEVKVDIYGRDFEYLPFGTGRRSCPGMNFGMEVVQLTAARLLQAFDFGTPFDLPVDMTEADSTTLAKEKPLEVVLRPRLSPELYI N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003147 [exp]	0	1
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	1.4	0.9868
					Lus10022008 [exp]	1.7	0.9845
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	3.2	0.9865
AT5G39130			RmlC-like cupins superfamily p...		Lus10000622 [exp]	4.9	0.9701
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019800 [exp]	5.1	0.9612
AT4G35160			O-methyltransferase family pro...		Lus10006692 [exp]	6.5	0.9679
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10039416 [exp]	7.0	0.9529
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10038200 [exp]	10.1	0.9783
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	11.6	0.9791
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	11.7	0.9796

Compare expression of checked genes

Lus10003147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.