Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 408 / 1e-137 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 396 / 5e-133 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 349 / 9e-115 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 317 / 3e-102 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 313 / 2e-100 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT4G37320 266 / 7e-83 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37310 264 / 5e-82 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT4G37330 258 / 6e-80 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT3G28740 251 / 7e-77 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT2G23190 249 / 7e-76 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002357 [exp] 976 / 0 AT4G31940 432 / 2e-146 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10022762 [exp] 672 / 0 AT4G31940 456 / 4e-156 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10003147 [exp] 620 / 0 AT4G31940 421 / 7e-143 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 520 / 0 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 515 / 2e-179 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 428 / 2e-145 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10025901 [exp] 427 / 1e-144 AT4G31940 426 / 2e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038178 [exp] 412 / 5e-139 AT4G31940 425 / 3e-144 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025904 [exp] 403 / 3e-135 AT4G31940 413 / 3e-139 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G334700 [exp] 494 / 4e-171 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037500 [exp] 460 / 4e-158 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 419 / 2e-142 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 409 / 2e-138 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 407 / 3e-137 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 389 / 4e-130 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.004G106600 [exp] 387 / 2e-129 AT3G25180 514 / 1e-179 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.014G037700 [exp] 386 / 5e-129 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 377 / 2e-125 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 375 / 1e-124 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10003148 pacid=23147788 polypeptide=Lus10003148 locus=Lus10003148.g ID=Lus10003148.BGIv1.0 annot-version=v1.0 ATGGATCTCTCTTCCCAACTCTTCGCACTCTCCGGGGTTTTGTTCTTCCTCCTCGTCCTGAAGCACCTAAAGGATAACAAGAACAGAGTCTACCGCCCTC AGATCCCCGAAATCCCTGGTGGGTTGCCCATCATCGGCCACCTCCACCTCCTCCGGGGCAAGGATGTCCTCTGCCGCCAGCTGGGCGCCCTGGCTGACAA GTACGGTAGCATGTACACCATCCGGTTGGGGTCCCACCCTACGGTCATTGTTAGCGACTACGAGGCCATGAAGGAGTGCTTTACAGACAACGATGTTGCC CTGGCTGCCAGACCTCAGTCTAGTCAGGGCAAAATCCTGGGGAAGAATTATTCTGTGTTTGGATTTGCATCCTACGGGATGTACTGGCGCAATGTTAAGA AGCTCATGATGACTGAGCTTCTCACGCTGGCCAGGATCAAAGCCCTGAGGCATGTCCAGGTCAAGGAGGTGGATAAGCTCGTTAGAGACCTGTACACTCG ATGTAACACGAGCAACGACAACACGAATGTGGTGGTGATGAGCGACTGGCTGCAAAACTTTGCGGTCAACATCATCACGACGATGATAGCAGGGAAGAGG TACTTCGAGGACCTTTCGGACATGGACGGTGTGGTCGATGAAGGAGGACGCCCGGTTGGGGAGATGATCAGGGAATACATGGCGCTGAACGGCTCGATGG TGTTGTCCGATTTCGTCCCCATTTATCGGTGGTTCGATCGTTTTGGGATACTCAGGACCATGAAGAGGGTTTCGAAGGAATTCGATGTCGTTGTGAATGG TTGGATCGAAGAGCACAAGGCGAAGAGGATCAAAATGGGCGCCGACAAGTTTCTCGACGAGGATTTCATCGATGTCATGCTCTCTGTTGTCGATGACACC TTCGATCCTACTTCAGAGTTTGACAAGGAAACCAGCGTCAAGTCTACCGCAACAACATTGGTGATAGCGGCCACGGACACGACGGCCGGAACGCTGACGT GGATCCTCTCCAACCTTCTCAACAAGCGGAGCACGTTGGAGAAGGCACACAAAGAGATGGACGAGAAAGTGGGACGGGACCGGATCGTACAGGATTCGGA TCTAGACAACCTCCACTACCTCCAGGCGATCGTAAGGGAGACGCTCCGCCTCTATGCTGGGCCCACGTCCGTGCCCCGTGTGGTCAGAGAGGACATCACT ATTCGAGGGTACTATGTGCCCAAAGGCACACGTTTTTCAGCGAACTTGTGGAAGCTCCACCGCAACCCGAATGTCTTCCCCAACCCGGACGAGTTCATCC CTGAGAGATTCTATGAGAAGCAGGTGACGGCTGACATATACGGACGGAGCTTTGAGTACCTGCCGTTCGGTACGGGACGGCGGTCGTGCCCCGGGATGCA TTTCGCGATGCAGGTGGTGCTGTTGTCGGCGGCGAGGTTGATTCAGGCGTTTGACTTCAGGATGCCGTTTGACCAAACGGTGGATTTGACGGAGGCGAAT AGCACCACGCTTTCTAAGAAGACTCCGTTGGAAGTCGTCGTTACCCCAAGACTTCCACATCAGCTTTACGACTAA
AA sequence Show only first row Show all	>Lus10003148 pacid=23147788 polypeptide=Lus10003148 locus=Lus10003148.g ID=Lus10003148.BGIv1.0 annot-version=v1.0 MDLSSQLFALSGVLFFLLVLKHLKDNKNRVYRPQIPEIPGGLPIIGHLHLLRGKDVLCRQLGALADKYGSMYTIRLGSHPTVIVSDYEAMKECFTDNDVA LAARPQSSQGKILGKNYSVFGFASYGMYWRNVKKLMMTELLTLARIKALRHVQVKEVDKLVRDLYTRCNTSNDNTNVVVMSDWLQNFAVNIITTMIAGKR YFEDLSDMDGVVDEGGRPVGEMIREYMALNGSMVLSDFVPIYRWFDRFGILRTMKRVSKEFDVVVNGWIEEHKAKRIKMGADKFLDEDFIDVMLSVVDDT FDPTSEFDKETSVKSTATTLVIAATDTTAGTLTWILSNLLNKRSTLEKAHKEMDEKVGRDRIVQDSDLDNLHYLQAIVRETLRLYAGPTSVPRVVREDIT IRGYYVPKGTRFSANLWKLHRNPNVFPNPDEFIPERFYEKQVTADIYGRSFEYLPFGTGRRSCPGMHFAMQVVLLSAARLIQAFDFRMPFDQTVDLTEAN STTLSKKTPLEVVVTPRLPHQLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10003148 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10017624 [exp]	1.0	0.9973
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10021743 [exp]	2.8	0.9937
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	2.8	0.9953
AT3G09520		ATEXO70H4	exocyst subunit exo70 family p...		Lus10024438 [exp]	3.5	0.9942
AT2G38870			Serine protease inhibitor, pot...		Lus10018786 [exp]	4.0	0.9923
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10034230 [exp]	6.0	0.9934
AT1G06135			unknown protein		Lus10000703 [exp]	6.6	0.9920
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	6.6	0.9818
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	7.1	0.9935
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	9.2	0.9885

Compare expression of checked genes

Lus10003148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.