Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 138 / 9e-41 J20 DNAJ-like 20 (.1.2) AT4G39960 69 / 2e-13 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G17880 66 / 2e-13 Chaperone DnaJ-domain superfamily protein (.1) AT2G22360 67 / 7e-13 DNAJ heat shock family protein (.1) AT3G13310 64 / 7e-13 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 66 / 2e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G37480 66 / 2e-12 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 62 / 4e-12 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 64 / 8e-12 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G71000 62 / 9e-12 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002356 [exp] 311 / 1e-108 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10003150 [exp] 251 / 6e-85 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002355 [exp] 237 / 2e-79 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10016637 [exp] 131 / 9e-38 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10022550 [exp] 124 / 4e-35 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10017263 [exp] 75 / 1e-16 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10020949 [exp] 75 / 2e-15 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10034484 [exp] 71 / 2e-15 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 70 / 3e-15 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 136 / 4e-40 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 134 / 6e-39 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.009G131800 [exp] 82 / 7e-20 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 81 / 8e-19 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 78 / 6e-18 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 78 / 1e-17 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 77 / 1e-17 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G088900 [exp] 76 / 8e-17 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G078801 [exp] 70 / 8e-15 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2) Potri.005G113100 [exp] 69 / 1e-14 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10003149 pacid=23147773 polypeptide=Lus10003149 locus=Lus10003149.g ID=Lus10003149.BGIv1.0 annot-version=v1.0 ATGAGTCAAGCAATCATCTTTGCCGGAACCCAACTCGCGGCCGGCCGTTCCCACTCGGCCCTTTCACCGACCTTCACTCCCACCCCTGAAAATCTCACCT TCACTCGCCGTCGACGACCCATCACTCTGATCAGGGCATCCGCCGCCGCGGCGGCCACCGCCGCAGAAAGCAACAGCCTTTACGCACCCATCGGCAGCTT CTACGACCTGCTGGGGATTCCGGAGAACGTGACGGCGCCGGAGATCAAGCAAGCTTACAGGAAGCTGGCAAGGAAGTACCACCCGGACGAATCGCCGCCG GAGAAAGCAGAGGAGTTTACGAAGCAGTTTCTGAGAGTCCAGGAGGCTTACGAGACGCTGTCGGATCCGCGGAGCAGGGCGGAGTACGACAGAGATTTGG CTTCTGGGTGGTTTTCTGGTCGGAAGCAGTTCGATAAGGGGATGGATCCGCAGGGGGAGTGGAGGCAGAGGTGGGAGAGTCAGGTGGAGGAGTTGCAGAG CATGCGGCGGGGGAGGCAGAGCAGTTGGGGAGATCGAATGAGGAGCCGTAGATCATCATGCGATTTCAAGGTGGGAGAGTCAGGTGGAGGAGTTGCAGAG CATGCGGCGGGGGAGGCAGAGCAGTTGGGGAGATCGAATGAGGAAGAGCCGGCGATCATCGTGCGATTTCAGTTTCAGTTAATTGGGGGATTATGA
AA sequence Show only first row Show all	>Lus10003149 pacid=23147773 polypeptide=Lus10003149 locus=Lus10003149.g ID=Lus10003149.BGIv1.0 annot-version=v1.0 MSQAIIFAGTQLAAGRSHSALSPTFTPTPENLTFTRRRRPITLIRASAAAAATAAESNSLYAPIGSFYDLLGIPENVTAPEIKQAYRKLARKYHPDESPP EKAEEFTKQFLRVQEAYETLSDPRSRAEYDRDLASGWFSGRKQFDKGMDPQGEWRQRWESQVEELQSMRRGRQSSWGDRMRSRRSSCDFKVGESGGGVAE HAAGEAEQLGRSNEEEPAIIVRFQFQLIGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003149 [exp]	0	1
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10020740 [exp]	1.4	0.9562
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	1.7	0.9633
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10015252 [exp]	2.8	0.9442
AT5G35370			S-locus lectin protein kinase ...		Lus10025618 [exp]	3.3	0.9435
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	3.6	0.9410
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	4.6	0.9505
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	5.5	0.9465
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	6.0	0.9440
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10021198 [exp]	6.9	0.9432
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10031612 [exp]	8.1	0.9309

Compare expression of checked genes

Lus10003149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.