Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13830 150 / 6e-46 J20 DNAJ-like 20 (.1.2) AT2G17880 69 / 7e-15 Chaperone DnaJ-domain superfamily protein (.1) AT4G36040 66 / 2e-13 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 66 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 65 / 2e-12 DNAJ heat shock family protein (.1) AT1G80030 64 / 6e-12 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G62600 64 / 6e-12 ATERDJ3B DNAJ heat shock family protein (.1) AT3G17830 64 / 6e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G35720 64 / 7e-12 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT3G13310 60 / 2e-11 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002356 [exp] 270 / 4e-93 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 264 / 2e-90 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003149 [exp] 243 / 6e-82 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10016637 [exp] 140 / 1e-41 AT4G13830 187 / 3e-60 DNAJ-like 20 (.1.2) Lus10022550 [exp] 134 / 2e-39 AT4G13830 181 / 6e-58 DNAJ-like 20 (.1.2) Lus10017263 [exp] 83 / 6e-20 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 76 / 7e-18 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10025060 [exp] 76 / 9e-18 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10019668 [exp] 77 / 1e-17 AT4G13830 82 / 6e-20 DNAJ-like 20 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058400 [exp] 151 / 3e-46 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 147 / 9e-45 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.002G020800 [exp] 86 / 7e-21 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 84 / 2e-20 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 83 / 5e-20 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020700 [exp] 83 / 7e-20 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 81 / 7e-20 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G088900 [exp] 79 / 2e-18 AT4G13830 91 / 3e-23 DNAJ-like 20 (.1.2) Potri.005G113100 [exp] 70 / 3e-15 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G078801 [exp] 70 / 4e-15 AT4G13830 88 / 4e-22 DNAJ-like 20 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10003150 pacid=23147796 polypeptide=Lus10003150 locus=Lus10003150.g ID=Lus10003150.BGIv1.0 annot-version=v1.0 ATGAGTCAATCAATCATCTCCGCCGAAACCCACCTCGCCTCCGGCCGTTCCCGGTACTCCACCCTGACACCCATCTTCACTTCCACTCCCCATGCTCTCA CCTTCACTCCCCACCACACCGGAAATTCCTCCCTCCGACGAACTTACCGGCGACCCATTAATCCAATCAGAGCATCCGCCGCCACCGCCACCGAAAGCAG CAGCCTTTACATAACCACCGAAAGCTTCTACGACCTCCTTGGAATCCCAACATCCGTGACGGCGCCGGAGATCAAGCAAGCGTACAGGAAACTAGCACGG AAGTACCACCCTGACGTTTCCCCGCCGGAGAAAACAGAGGAGTTTACAAAACAGTTTCTGAGAGTTCAGGAGGCTTACGAAACGCTGTCGGATCCACGTA GCAGGGCCGATTACGATAGAGATTTGGCTTCTGGGTTCCACTTGGGATTCTCTGCCGGGAAGCAATTCAATAAAGGGATGGATCCGAAGGGGGAGTGGAA ACAGAGGTGGCAGAGTCAGGTGGAGGAGTTGCAGAGCCTGCGGCGGCGGAAACAGAGTAATCAGTCGTCGTGGGGAGATAGAACGAGGAGGAGTCATAGT TCATCCGAGTTCAGTTTCAATTAG
AA sequence Show only first row Show all	>Lus10003150 pacid=23147796 polypeptide=Lus10003150 locus=Lus10003150.g ID=Lus10003150.BGIv1.0 annot-version=v1.0 MSQSIISAETHLASGRSRYSTLTPIFTSTPHALTFTPHHTGNSSLRRTYRRPINPIRASAATATESSSLYITTESFYDLLGIPTSVTAPEIKQAYRKLAR KYHPDVSPPEKTEEFTKQFLRVQEAYETLSDPRSRADYDRDLASGFHLGFSAGKQFNKGMDPKGEWKQRWQSQVEELQSLRRRKQSNQSSWGDRTRRSHS SSEFSFN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10003150 [exp]	0	1
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	15.4	0.7403
					Lus10002237 [exp]	20.1	0.7223
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	23.7	0.7214
AT1G64870			unknown protein		Lus10041678 [exp]	28.2	0.7001
AT1G62935			unknown protein		Lus10009297 [exp]	32.1	0.7031
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	35.1	0.6351
					Lus10015230 [exp]	37.0	0.6955
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10028473 [exp]	42.8	0.6760
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	44.2	0.6669
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	59.7	0.6056

Compare expression of checked genes

Lus10003150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.