Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07270 579 / 0 GTP cyclohydrolase I (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002353 [exp] 916 / 0 AT3G07270 567 / 0.0 GTP cyclohydrolase I (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195000 [exp] 685 / 0 AT3G07270 590 / 0.0 GTP cyclohydrolase I (.1.2) Potri.002G247100 [exp] 638 / 0 AT3G07270 551 / 0.0 GTP cyclohydrolase I (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0334 [flax] [poplar] THBO-biosyn PF01227 [flax] [poplar] GTP_cyclohydroI GTP cyclohydrolase I
Representative CDS sequence Show only first row Show all	>Lus10003152 pacid=23147772 polypeptide=Lus10003152 locus=Lus10003152.g ID=Lus10003152.BGIv1.0 annot-version=v1.0 ATGGGCGCCTTGGATGAAGGGCATTTCCATGTGGTGCTTGAGAACGGAGTGAAATTTCTAGACTGCCCTGACCAGCTTGGATTTGAGGATCAGCAGCCTG AGACTAGTTTAGATATTGAGGATGCTGTTAAAGTCCTTTTGCAAGGTTTGGGGGAGGATGTCAATAGAGAAGGAATCAAAAAGACTCCCATCCGTGTTGC TAAAGCCCTCCGGGAAGCCACTAAAGGTTATAAGCAGAAGGTGAAGGACATAGTTGAGGGGGCTTTGTTTCCTGAAGCTGGTTTGAATGCTACAGTAGGG CATGCAGGAGGAACTGGGGGACTTGTGGTTGTCCGGGATCTCGATCTCTTCTCGTACTGTGAGTCTTGCCTGCTCCCGTTCCAGTTCAAATGCCATGTGG GTTATATCCCATCTGGCCAGAGAGTTGTAGGGTTAAGCAAGCTTTCCAGGGTGGCTGATGTCTTTGCCAAGCGTCTCCAAGACCCACAGCGTCTGGCGAA CGAAATCTGTTCAGCTCTTCATCAGTGGATCAAGCCGGCCGGTGTTGCTGTCGTGCTCCAGTGCCGGCACCTCCATTTTCCGAGCTTAGAATCGTTCCTC AAAGACTCCAATCATCAAGGATGGTTGAAGGTGCTAGTCCGTGCAGGCTCGGGTCTTTTCGAAAACGATAAGTGCGAAGGCTGGAGTGATTTTTCAAGTC TCCTGAGGTTCAGAGGCATAAATACTGAGAATGCACATCCTGGAGATTCTATAACCTCATGGTGTCCATCTCTATCCTGCTCGACCCTAAAAGTTCCTTC CTTGAACGGACAAATCAACTCGGGAATGATCACAGCGGTGGATTCGATACTCAAGTCATTAGGGGAAGATCCCTCGAGAGAAGAGCTTATCGGGACGCCC AGTCGTTTCGTGAAGTGGCTAATGAATTTTCAGAATGCCAGTTTGGAGATGAAGTTAAATGGCTTTGTCCATGGTAGGGTGGATCATCATCTGAAGGCTA ATGGTGAATTGAACCATGCCAAAGAGCAAATGCAGTCCGAGGTAAACTTGTCGTTCTGGTCACAATGTGAACATCATTTACTGCCTTTCTATGGAGTTGT GCATATTGGATACTTCTCTTCCGAAGGGTTCAATCCTATCCCAAAGTCCCTTCTGCAATCAATAGTCCATTTTTACGGGTTCAAGCTCCAAGTACAGGAG AGACTTACCAGGCAGATTGCAGAGACTGTTTCGCCGTTATTAGGCGGAGATGTCATAGTAGTTGTAGAAGCTGGGCACACTTGTATGATTTCCAGAGGCA TTGAGAAGTTCGGAAGCAGTACAGCCACAATAGCCGTTTTGGGACAATTTTCGACTGATGCTGCTGCTAGAGCCATGTTCTTGCAGAGCCTCCCAAATAA TAGTGCAGCCTTGGGAGCTTCATGA
AA sequence Show only first row Show all	>Lus10003152 pacid=23147772 polypeptide=Lus10003152 locus=Lus10003152.g ID=Lus10003152.BGIv1.0 annot-version=v1.0 MGALDEGHFHVVLENGVKFLDCPDQLGFEDQQPETSLDIEDAVKVLLQGLGEDVNREGIKKTPIRVAKALREATKGYKQKVKDIVEGALFPEAGLNATVG HAGGTGGLVVVRDLDLFSYCESCLLPFQFKCHVGYIPSGQRVVGLSKLSRVADVFAKRLQDPQRLANEICSALHQWIKPAGVAVVLQCRHLHFPSLESFL KDSNHQGWLKVLVRAGSGLFENDKCEGWSDFSSLLRFRGINTENAHPGDSITSWCPSLSCSTLKVPSLNGQINSGMITAVDSILKSLGEDPSREELIGTP SRFVKWLMNFQNASLEMKLNGFVHGRVDHHLKANGELNHAKEQMQSEVNLSFWSQCEHHLLPFYGVVHIGYFSSEGFNPIPKSLLQSIVHFYGFKLQVQE RLTRQIAETVSPLLGGDVIVVVEAGHTCMISRGIEKFGSSTATIAVLGQFSTDAAARAMFLQSLPNNSAALGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	0	1
AT5G57460			unknown protein		Lus10004737 [exp]	5.1	0.8378
AT2G20760			Clathrin light chain protein (...		Lus10018480 [exp]	6.3	0.8861
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10007274 [exp]	7.1	0.8776
AT3G58050			unknown protein		Lus10021073 [exp]	7.7	0.8693
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	9.6	0.8753
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	9.8	0.8765
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	13.4	0.8583
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10012037 [exp]	14.2	0.8064
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	17.9	0.8567
AT4G02040			unknown protein		Lus10019069 [exp]	18.0	0.8490

Compare expression of checked genes

Lus10003152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.