Plant FIBer expression Database

Lus10003153 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G43490 81 / 2e-17 unknown protein
AT5G48610 50 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002352
[exp]
914 / 0 AT5G43490 78 / 2e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G058600
[exp]
117 / 1e-28 AT5G43490 71 / 2e-14 unknown protein
Potri.001G319500
[exp]
114 / 1e-26 AT5G43490 71 / 6e-14 unknown protein
Potri.017G058500
[exp]
112 / 7e-26 AT5G43490 85 / 5e-19 unknown protein
Potri.001G319600
[exp]
112 / 7e-26 AT5G43490 71 / 6e-14 unknown protein
Potri.017G058701
[exp]
54 / 6e-08 AT5G48610 52 / 4e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10003153 pacid=23147781 polypeptide=Lus10003153 locus=Lus10003153.g ID=Lus10003153.BGIv1.0 annot-version=v1.0
ATGTCTCGCTGCTTCCCATTTCCTCCACCTGGATATGAGAAGAAGACTAGAGTTGACGATACCGACTTGCTAGCTAAGGAGAAGCAGAAGGAGAAAAAGC
ACAAGAAAGATAAGAAGCACAAAGACAAGAAAGAGGATAAAGAGAAAAAGGATAAAGATAGAAGCAAAGAAAAACACAGGGAGAAGAAACACCGGAAGGA
GAAGAGCAAAGACAAGGAGAAGGAAGGGGACAAAGAGAAAAATCGAGTAGAAGGCGGGCAGGCAGCACAACACAATAATGGACAGAATGTTAGCTCAAGT
AGTGTTGAGAATAATGAGATCAAAGATTCGAAGTTTGTGCAGGAGTTGGCCAAAAGGATCAATGATAGTGGAGTATCACCAGCAACCCAGATGGTGCATA
AGAATGCTGTTAATAATGATCAGAAGAGGGCAGAGCCACGTGGTGTGTACCCTGAGAGTAGTAGCATTGGATCCCAGTCCAAGGAGAAGGAGAAAAATAA
GGGAAACGGTGAAGATCGATCTAAATTCAATTTGCAAAGGAGTCTCATTGAAGCAAAAGACACGGAAAATAACTTCGCTGGCATCGACAAACAAAGAGCT
GAAGATGCTACTAAACTGGCGGAGAAGAAGGGTGAGAAGCCCATTGAAGGTAAAGAGAAGAAACATAAGGAGAGTAAGGAAAAGGATCGAGGTTCGAAAT
CAAAAAGTAAGGAAAGGGATAAGGAGAAGAAAAAAGAGGAGAGAGTGAAGGAAATAAAACAGCCGGGTAAAGATCAGACCTTGAAAGAAAGTAAGAACTC
CTTGGACTTTGGGGATACCATTCCATCTGATCTATCGAAGTTGAGAGGCGCTAATTTCGGCAGTGAGGGAAATTTGCGCAAGCATAATGAGATTGAGGGT
GAGATCTTTAAGGAATTTGTTCCGAGACTAAAGGAAAGTAACAAGGATCCCTTGGACTTCCGGAACATCAAGACCTCAAGCCCTTTAAAGTTAAGCAAGA
CTGCTGTCATCAGTGAGGGAACTATTGGGGCTCAAGTGTTAAAAGAAAGTGCTCCTAAGCTAAAAGGAAGTAACAAGGACTCTTTGGACTTTCGGATTAC
GAAACTGTCAGATGCATCAAAGTTAGGCAGCACAACTTTCAGCAATGAGGGAATGCTTGGCAAGCGTAAGGAACTTGATGACAGAGGTCTGCCAATCAAA
GAATGTTACAAGGAATCCTCACACTCCCCGAATATCAAAACCTCAGATGCATCTCAGTTAAACTGCAAAACTTCGAGCAATGAGGGAACCCTTGGCAGAC
ACAATGAGCTTGATGATAGTGGTAGCAAGATGAAAGAAAGTAACAAGAACTCCCTTGATTTCCGAAGTAACAAAATCTCGGAACCCTTAAAGCTAAGCAG
CCCGGCTTGCAGCAGCGAGGGAACTCTTGGGAAGCGTAAGGAGCTTGAGGTCAACGGACATTTGCTCGACAATGGGCATCGGCCTAGCAAATTGCCAAGA
CCTGTCCCAACTCCTGATTCTACCATCCAAAATGGAAGGAAATCGGAGCCATTCAGAACCGCTGTTCAGCTTGCATCTGAGAAGCAAGAGGCAGCAGCTA
ATGGTAAGAGTGTAGAAATGATCAAGGAACACAGGATTAACGGGTTTATAACCGCTGAACAGTCGAAGCCATCCTCAGGAAGGACTCCTCCACCTGCTAA
AGTACCACCAGCAGCTATTCCCAAAAAGGAAACTGTAAAATCACCTCATCCTGATACCAAGTATCTGGGTCAGATACTTTCTGTGCCTGAGCAGGTAGAA
CCGCCGGGCTTCTGCGACCAGGACTGGCTATTTAGTGGCATTCAGCCATTGTCGAAGAAGCCTCGTAGGGATTCTAGTCCTGTGGGTGATGGAACTAAGG
AAGTATGGGCAGAAGCTCTCCGGATAGAGTCTGCTGACATTTCAGCGCTGCCATATGTCATTCCTTACTGA
AA sequence
>Lus10003153 pacid=23147781 polypeptide=Lus10003153 locus=Lus10003153.g ID=Lus10003153.BGIv1.0 annot-version=v1.0
MSRCFPFPPPGYEKKTRVDDTDLLAKEKQKEKKHKKDKKHKDKKEDKEKKDKDRSKEKHREKKHRKEKSKDKEKEGDKEKNRVEGGQAAQHNNGQNVSSS
SVENNEIKDSKFVQELAKRINDSGVSPATQMVHKNAVNNDQKRAEPRGVYPESSSIGSQSKEKEKNKGNGEDRSKFNLQRSLIEAKDTENNFAGIDKQRA
EDATKLAEKKGEKPIEGKEKKHKESKEKDRGSKSKSKERDKEKKKEERVKEIKQPGKDQTLKESKNSLDFGDTIPSDLSKLRGANFGSEGNLRKHNEIEG
EIFKEFVPRLKESNKDPLDFRNIKTSSPLKLSKTAVISEGTIGAQVLKESAPKLKGSNKDSLDFRITKLSDASKLGSTTFSNEGMLGKRKELDDRGLPIK
ECYKESSHSPNIKTSDASQLNCKTSSNEGTLGRHNELDDSGSKMKESNKNSLDFRSNKISEPLKLSSPACSSEGTLGKRKELEVNGHLLDNGHRPSKLPR
PVPTPDSTIQNGRKSEPFRTAVQLASEKQEAAANGKSVEMIKEHRINGFITAEQSKPSSGRTPPPAKVPPAAIPKKETVKSPHPDTKYLGQILSVPEQVE
PPGFCDQDWLFSGIQPLSKKPRRDSSPVGDGTKEVWAEALRIESADISALPYVIPY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G43490 unknown protein Lus10003153
[exp]
0 1
AT5G67320 HOS15 high expression of osmotically... Lus10024972
[exp]
1.0 0.8945
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10043184
[exp]
2.4 0.8289
AT5G41020 MYB myb family transcription facto... Lus10041714
[exp]
4.0 0.8680
AT5G02490 AtHsp70-2 Heat shock protein 70 (Hsp 70)... Lus10040304
[exp]
4.0 0.8425
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Lus10040141
[exp]
4.9 0.7991
AT5G43490 unknown protein Lus10002352
[exp]
5.2 0.8517
AT5G56360 PSL4 PRIORITY IN SWEET LIFE 4, calm... Lus10013398
[exp]
5.7 0.8081
AT5G41020 MYB myb family transcription facto... Lus10024036
[exp]
7.7 0.8421
AT4G35540 zinc ion binding;transcription... Lus10014847
[exp]
8.4 0.7875
AT5G41020 MYB myb family transcription facto... Lus10022926
[exp]
8.4 0.8111

Lus10003153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.