Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 296 / 1e-95 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 287 / 4e-92 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 287 / 6e-92 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT4G27570 286 / 6e-92 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 286 / 7e-92 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 282 / 4e-90 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 280 / 1e-89 UDP-Glycosyltransferase superfamily protein (.1.2) AT1G64920 277 / 2e-88 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 276 / 3e-88 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 268 / 9e-85 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002350 [exp] 402 / 1e-140 AT1G64910 179 / 2e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 293 / 2e-94 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 284 / 2e-90 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 281 / 2e-89 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10013337 [exp] 275 / 2e-87 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 215 / 4e-64 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 206 / 1e-60 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 203 / 8e-60 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 191 / 5e-55 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G179700 [exp] 607 / 0 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 330 / 7e-109 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 323 / 5e-106 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 243 / 1e-75 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 225 / 4e-68 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 223 / 2e-67 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 223 / 3e-67 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 222 / 2e-66 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 216 / 8e-65 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 211 / 1e-62 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003154 pacid=23147787 polypeptide=Lus10003154 locus=Lus10003154.g ID=Lus10003154.BGIv1.0 annot-version=v1.0 ATGGTACGAACAGCAGAGTCATCACCGGCCGATGAGGAGCTCCACGTAGTGATGTTCCCGTGGTTCGCATTCGGCCACATTTCGCCCTTCATCCAGCTCG CCAACAAGCTATCCCTCCACGGCAGAGTCCGAATCTCCTTCTTCTCCGCACCGGGGAACATCCCCCGAATCGCGAATTCGCTTCTTCCGTCCCCAACCAC ACAAATCATCCCTCTCCCTATCCCTCCGGTCGAAGGCCTCCCTCCTGGCCTCGACAGCACTGCGGAGCTCCCTCCACATCTCGCTGAGTTACTTAAAATT GCCCTCGACCTTATGCAGCCACAGGTGAGGGAGTTGTTGATTCAGCTCAAGCCCGATTTCGTCTTCTTCGATCATTACCAGCATTGGCTCCCTGGGATGG GCTCCAAGCTCGGGATCAAGACCCTTAGCTTCACAGTTTTTTCCGCAGTTTCCACCGGGTATCTAACTGTGCCGGCGAGAATTGAAGGTGGAAAAATCCC CACGGTGGAGGATATGAAGAGGCCTCCGAAAGGTTACCCCGAAACGCCGGTTGACCAAATGAAGACTTTCACGGCTAGAGACTTCACCTATGTGTACAAG AAGTTTAACGGCGGTTTGAGCGTCATCGACAGAGTCTTGGATTGTCGTAATGCCGCCACCGCACTGGTGTTCAAGTCGTGCAACGAGATCGAAGGTCCGT ACTTGGACTACTTACGAACCCAGTTCGCGAAACCGGTTCTCTCGTGTGGTCCGCTCGTGCCCGAGCCTCCCACTGGGAGGCTCGAGGATAGATGGGCCGA CTGGTTGGGACGGTTCCCAACCAGTTCGATCGTATTCTGTAATTTCGGGAGCGAAACATTCTTGACCGACGAGCAGATCCGAGAGCTAGCTTTCGGGTTG GAGAATACCGGACTCCCTTTCTTCCTGGTGTTGAATTTCCCGGCCCAGCTCGATAGTCGAACCGAACTGGACCGGGCGCTGCCAGAGGGGTTCCTAGAGA GAGTGAAAGACAGAGGTGTTGTGCATACCGGGTGGGTACAGCAGCCGCTCATATTAGCACACGGTAGCGTGGGTTGCTACTTGAACCATGCTGGATTTAG CTCGCTGATCGAAGGACTGATCCACGACTGTAAGCTGGTGTTGCTGCCGTTGAAAGGCGATCAGTACTTGAACGCGAAACTTATCACCGGAGACATGAAG GCTGGAATTGAGGTCGATCGGAGGGACGAGGATGGTTACTTCGGAAGGGACGATGTTACGAGAGCTGTCAATACGATCATGGCCGGTGATGCTGATAAGG AGCCGCTCAAGTCCATAAGGGAGAATCAGGAGAAGTGGAAGAAGTTTCTGTTAGATGATGAGGCGCAGAATAAGTATGCTAAAGAGCTGGTGGCACAGCT CAAGGCTATGAAAATTTCGGCTTAG
AA sequence Show only first row Show all	>Lus10003154 pacid=23147787 polypeptide=Lus10003154 locus=Lus10003154.g ID=Lus10003154.BGIv1.0 annot-version=v1.0 MVRTAESSPADEELHVVMFPWFAFGHISPFIQLANKLSLHGRVRISFFSAPGNIPRIANSLLPSPTTQIIPLPIPPVEGLPPGLDSTAELPPHLAELLKI ALDLMQPQVRELLIQLKPDFVFFDHYQHWLPGMGSKLGIKTLSFTVFSAVSTGYLTVPARIEGGKIPTVEDMKRPPKGYPETPVDQMKTFTARDFTYVYK KFNGGLSVIDRVLDCRNAATALVFKSCNEIEGPYLDYLRTQFAKPVLSCGPLVPEPPTGRLEDRWADWLGRFPTSSIVFCNFGSETFLTDEQIRELAFGL ENTGLPFFLVLNFPAQLDSRTELDRALPEGFLERVKDRGVVHTGWVQQPLILAHGSVGCYLNHAGFSSLIEGLIHDCKLVLLPLKGDQYLNAKLITGDMK AGIEVDRRDEDGYFGRDDVTRAVNTIMAGDADKEPLKSIRENQEKWKKFLLDDEAQNKYAKELVAQLKAMKISA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54010			UDP-Glycosyltransferase superf...		Lus10003154 [exp]	0	1
AT1G64910			UDP-Glycosyltransferase superf...		Lus10002350 [exp]	3.7	0.7320
AT3G45070			P-loop containing nucleoside t...		Lus10041611 [exp]	9.4	0.7716
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	9.5	0.7610
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10018505 [exp]	10.1	0.6998
AT2G23945			Eukaryotic aspartyl protease f...		Lus10002275 [exp]	13.5	0.7149
AT3G09870			SAUR-like auxin-responsive pro...		Lus10026531 [exp]	17.7	0.7463
AT2G40435			unknown protein		Lus10025257 [exp]	18.7	0.7341
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	20.0	0.7698
AT5G25310			Exostosin family protein (.1)		Lus10001917 [exp]	26.5	0.6666
AT1G75680		ATGH9B7	glycosyl hydrolase 9B7 (.1)		Lus10014265 [exp]	37.5	0.6969

Compare expression of checked genes

Lus10003154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.