Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13020 628 / 0 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT4G19110 390 / 7e-133 Protein kinase superfamily protein (.1.2.3) AT5G45430 388 / 2e-131 Protein kinase superfamily protein (.1.2) AT5G63370 216 / 4e-65 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G66750 204 / 3e-62 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT4G01370 206 / 4e-62 ATMPK4 MAP kinase 4 (.1) AT1G01560 197 / 5e-59 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 196 / 1e-58 ATMPK5 MAP kinase 5 (.1) AT3G48750 194 / 1e-58 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G67580 203 / 3e-58 CDKG;2 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008303 [exp] 390 / 3e-132 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 387 / 7e-131 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10038123 [exp] 370 / 5e-124 AT4G19110 555 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036384 [exp] 209 / 3e-63 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 205 / 8e-62 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10015816 [exp] 208 / 8e-60 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017518 [exp] 199 / 1e-59 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10036995 [exp] 207 / 3e-59 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028765 [exp] 197 / 5e-59 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G247500 [exp] 702 / 0 AT4G13020 629 / 0.0 Protein kinase superfamily protein (.1.2.3.4.5) Potri.003G101600 [exp] 395 / 8e-135 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.016G012801 [exp] 360 / 3e-122 AT4G19110 452 / 3e-158 Protein kinase superfamily protein (.1.2.3) Potri.003G190200 [exp] 362 / 5e-122 AT4G19110 508 / 5e-179 Protein kinase superfamily protein (.1.2.3) Potri.010G154400 [exp] 358 / 1e-121 AT4G19110 451 / 4e-158 Protein kinase superfamily protein (.1.2.3) Potri.001G035400 [exp] 253 / 9e-83 AT4G19110 306 / 9e-104 Protein kinase superfamily protein (.1.2.3) Potri.015G092100 [exp] 218 / 7e-64 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 209 / 5e-61 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G162500 [exp] 201 / 2e-60 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.010G056900 [exp] 208 / 6e-60 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003155 pacid=23147774 polypeptide=Lus10003155 locus=Lus10003155.g ID=Lus10003155.BGIv1.0 annot-version=v1.0 ATGTTGGAAGAGCTCGGCGATGGTACCTGTGGTAGCGTCTTTAGGGCCATCAATACAGCCACCTATGAAATTGTTGCTGTGAAGAAAATGAAAAGAAAGT TCTATTTTTGGGAAGAGTGTATGAACCTGCGAGAAGTAAAGGTCCTTCAAAGATTGAATCACCCCAATATCATAAAGCTGAAAGAGGTTGTCCGGGAAAA CAATGAGCTATTCTTCATTTTTGAGTACATGGAACACAATCTGTACCAAATAATGAAGGAGCGAGAAAGCCCTTTTACCGAGAAGGAAATAAGGAGCTTT ATGGCCCAGGTGCTACAAGGGCTTTCAAATATGCATAAGAATGGATATTTTCATCGTGATCTAAAACCTGAGAATTTGCTGGTGACAAATGATGTTCTAA AAATAGCAGACTTTGGGCTGGCTAGGGAACTTTCATCACACCCACCTTATACTGAATATGTCTCCACACGGTGGTATCGTGCTCCAGAAGTTTTGTTACA GTCATCAATGTACACTCCTGCAATTGATATGTGGGCGATCGGAGCTATACTTGCTGAACTATTCACTCTATCACCTATATTCCCTGGAGAAAGTGAAATA GATCAATTATTCAAGATTTGCTGCGTTCTTGGTTCACCTGATTGGAGTACCTTTCCTGAGGCTACCAACATATCTCGACTGATGAATGTTAGCCATTCAG AGATAACACCTGCAAATTTAGCTGATATCATTCCAAATGCAAGCTCAGAAGCACTTAATCTAATTGTGCAACTGTGTTCATGGGATCCACTGAAGAGGCC AACTGCCGACCAGGCTCTGCAACATCCCTTTTTCCATGTTGCTATGAGAGTTCCCTACCCACTTCGGGATCCACTTGAACTGAGCCTGAACAATATTGGA GCAATGCCGAATCTCGAATTAAACCTCTGGGATTTTGGTACTCAAACTGACGACTGTTTCTTGGGACTGACACTGGCAGTGAAGCCTAGTGCTTCAAACT TGGAGAGAGTCCATAATGCTTCGCAAGGCATGGAAAAGGACATTTTGTTTTGTTCTTCTGATTTCAACGGCCACCAAGATCAATCAGTGTTCTGGTCTCT CGTATCCCCTGCACAAAGCCGGAATCACCCTCCTGTGGAATCATCTCTATCGTTATCGTTCAGTTCGATCCAGCATCCGTCGGTAGGCGTCCCACAGTCA TCCGGGTTCGCAATCGCTTCACTTCAACCCAACATCCTCGACTGCCGTCCATTGTTGGCGATGTCTTCACCATTGCAGCAAAGCCATTACATCTGA
AA sequence Show only first row Show all	>Lus10003155 pacid=23147774 polypeptide=Lus10003155 locus=Lus10003155.g ID=Lus10003155.BGIv1.0 annot-version=v1.0 MLEELGDGTCGSVFRAINTATYEIVAVKKMKRKFYFWEECMNLREVKVLQRLNHPNIIKLKEVVRENNELFFIFEYMEHNLYQIMKERESPFTEKEIRSF MAQVLQGLSNMHKNGYFHRDLKPENLLVTNDVLKIADFGLARELSSHPPYTEYVSTRWYRAPEVLLQSSMYTPAIDMWAIGAILAELFTLSPIFPGESEI DQLFKICCVLGSPDWSTFPEATNISRLMNVSHSEITPANLADIIPNASSEALNLIVQLCSWDPLKRPTADQALQHPFFHVAMRVPYPLRDPLELSLNNIG AMPNLELNLWDFGTQTDDCFLGLTLAVKPSASNLERVHNASQGMEKDILFCSSDFNGHQDQSVFWSLVSPAQSRNHPPVESSLSLSFSSIQHPSVGVPQS SGFAIASLQPNILDCRPLLAMSSPLQQSHYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13020		MHK	Protein kinase superfamily pro...		Lus10003155 [exp]	0	1
AT1G68490			unknown protein		Lus10038934 [exp]	2.2	0.9114
AT1G19310			RING/U-box superfamily protein...		Lus10016303 [exp]	3.2	0.8718
AT3G02555			unknown protein		Lus10027224 [exp]	3.5	0.8772
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	6.7	0.8558
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	7.3	0.8227
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10034985 [exp]	9.8	0.8721
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	11.0	0.7979
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10003034 [exp]	12.1	0.7790
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	13.3	0.8166
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10014859 [exp]	13.8	0.7994

Compare expression of checked genes

Lus10003155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.