Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16030 527 / 6e-175 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G21380 461 / 1e-149 ARK3 receptor kinase 3 (.1) AT1G65800 425 / 9e-136 ARK2 receptor kinase 2 (.1) AT1G11340 422 / 3e-134 S-locus lectin protein kinase family protein (.1) AT1G11410 410 / 4e-130 S-locus lectin protein kinase family protein (.1) AT4G23180 399 / 8e-128 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23230 382 / 9e-124 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT3G45860 382 / 2e-121 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23200 381 / 3e-121 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23140 380 / 1e-120 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009582 [exp] 777 / 0 AT3G16030 498 / 3e-165 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10025784 [exp] 528 / 3e-174 AT3G16030 596 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10037729 [exp] 460 / 3e-149 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 457 / 5e-148 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 448 / 2e-144 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10020052 [exp] 445 / 2e-143 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 444 / 6e-143 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 442 / 3e-142 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10007600 [exp] 457 / 1e-140 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442200 [exp] 543 / 0 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.005G014900 [exp] 503 / 2e-165 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G150900 [exp] 479 / 9e-157 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 466 / 7e-152 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 461 / 8e-150 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 459 / 7e-149 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 453 / 6e-147 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 453 / 6e-147 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 449 / 2e-145 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 444 / 2e-143 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10003156 pacid=23147795 polypeptide=Lus10003156 locus=Lus10003156.g ID=Lus10003156.BGIv1.0 annot-version=v1.0 ATGGCAATCCTTGCCTGCTTCGGATTTCACCTGCTGCTGTTATTGTTGCTATTAGCAACGCCATGCCACCAGAAGCAGTCCACACTGCTGCAGGGCCAGG AAATCGGTCTGAAGAACACTCTGCTCACTTCCGCAAACGGGGTGTTCATACTTCAGTTCGGATTTCTCGACTACAACGCCCCGACAGATTCTCGCGAGAA GTCTGCCAAAAATTTCTACCTGGGAGTATGGTACAATACTAACCAGGGACAAAATGTCCCGCCGGTCTGGATTGCGAACCGGGACACCCCGTTAGCAGAT TTCTTGAAGCACCGTTGTTCCCTGACTATTGACGGCAGAGACGGCGGCTTCAAGATTCTGCAGGATGGCGGAGAGACCATCATTATATTTGCGCCACCTG GTGATGCGTATCGCCACAGTTATAATTCAAGTGTGACATTGGAGGATTCAGGGAATCTCGTACTCTGCGAGCTTCATCCTGGTGGCTCGATCAAACAGAT AGTTTGGCAGAGTTTTGATCACCCGACCGACACATTTCTCCCTGGAATGAAGCTTGGAATAGACCACAAAAGCGGCCAACAACGGTCTATAACATCATCA AGGAGTCCAATTTCAGCTGCTAAAGGTTCATTTACTTTCGGGGTCGACCCAAATGATACAGCTCGACTAATCATTTGGCGAAGAGGGGAACCAATCTGGA AGAGTGCCCCTCCGAGTCAAAATACAACGTTATTCCCATTTTTCGAGTTCAAATTCAGCTATATCTCGAACGAAAACGAGACATACATCAGCTACAAAAT ACCTGATACAGTACTTTATCCGAGTTTGCGGATAGAACCTAATGGTCGGCTTGTTGGCTACTATTTCCAAGGAGGCCGTAGCACCTCCGAGGAAATTGAT TGCGGACGACAGCCACTGTCGAATGAGCGATCAAACTGTGTGCCTTTGAAACTTCCTAAATGTAGAAACTCGTCCGGCCTTATCACCGGCCAAGAATATC CATTTATGTTCGAATCTCATTTGGGCGTCATGGCTAGCCAAGGTGTCAAGCTAAGCGAAACCGAGAATATGACACTCGAAGACTGCAGACAGAACTGCTT CGAGGAGTGTTCTTGTGCTGCATTTGCTGCCACCAATGCCGATGAGACAGGGTGTGAGATGTGGAGCTCGACTTTCGGATTCATAAGGAGCCTTCCTAAT TCACATGACCAGAGGCAGATATACTTTATCTATCAGAAAAAAGAATGGTGGATTTGGGTTGCAATTGCAGTAGGATTAGCTTTCACCATCCCTCCGATCG TTTGCTTCTGCTACATGCTTTGGATCAACTTCAAAGATGAAGGTAATTCTCACTCAATACTCGTCTTTATGGCTACAACATCGTTCGACATAATTCTCAC TCAAGTGAAGATAAATGTGTTTACACTTATTGACGATTTGGTTGGACCGGATTTAGGCAAACTGAATATCAATTTGAAGAGTCTTCTCGGCTTAGTAGAA GAAAATATGTTGCCTAATTCATCAAGTGGTGCTTCAAGAAGAGAAGAAGATGACCAGAATGAACTGAAGATGTTCAACTTCGAAACTATTACGGTTGCCA CGAATTATTTTTGTGCAACAAACAAACTTGGAGAAGGGGGTTTCGGACCTGTTTATAAGGGACAGTTAGCAAATGGACAAGAAATTGCGATAAAAAGATT ATCAAAAAGTTCAGAACAAGGGTTTGTGGAGTTCAGAAATGAAGTCGTTCTTGTTGCTAAACTACAGCACACGAACCTCGTTAGGTTATTGGGGTTATGC ATACTCGCGGGAGAAATGATATTAGTTTATGAGTATATGCCAAACAAAAGTTTGGATTTGATTCTTTTCGATGTGGAGAGAAAGAGTATGTTGAATTGGA AAAAACGATTTCACATTATTGAGGGAATTGCACAGGGATTGCTTTACCTCCACAAATATTCCAGATTGAAAGTGATTCACCGTGACTTGAAGGCAAGCAA TGTATTACTTGATGATGAAATGAATCCAAAGATATCGGATTTTGGAATGGCTAGGATATTCGGTATCAAAGAATCGGAGACAAACACTGAACGTATTGTT GGAACATATGGTTATATGTCTCCAGAGTATGCATTACATGGTATTGTCTCAGTTAAAGTTGATGTGTTCAGCTTCGGTGTCTTACTATTGGAAATTGTAA GTGGAAGAAAGAACAATTCCTTCTACCACTTTGATGGAAAACCGGTCATGCTCATTGGATATGCATGGAAACTTTGGAATGAAGGCCACGGACTCGAACT TGTGGACCAAACATTAGAAGATTGTAACGTCACAAACGCAATGAGATGCATTCATATAGGTCTATTGTGTGTTCAAGAACATGCCACAGATAGACCAACT ATGTCGGAAGTTCTAACCATGTTGTCCAATGAGACAATAGAGCTTCTTACTCCAAAGCAGCCTGTACTCTTCATTGGTGGCATAGCACATCTTGGCGATA TACAAATTGATGATGAAAGTCATTCCAGAAATACAATGACTGTATCCACAATGGGAGCAAGATAG
AA sequence Show only first row Show all	>Lus10003156 pacid=23147795 polypeptide=Lus10003156 locus=Lus10003156.g ID=Lus10003156.BGIv1.0 annot-version=v1.0 MAILACFGFHLLLLLLLLATPCHQKQSTLLQGQEIGLKNTLLTSANGVFILQFGFLDYNAPTDSREKSAKNFYLGVWYNTNQGQNVPPVWIANRDTPLAD FLKHRCSLTIDGRDGGFKILQDGGETIIIFAPPGDAYRHSYNSSVTLEDSGNLVLCELHPGGSIKQIVWQSFDHPTDTFLPGMKLGIDHKSGQQRSITSS RSPISAAKGSFTFGVDPNDTARLIIWRRGEPIWKSAPPSQNTTLFPFFEFKFSYISNENETYISYKIPDTVLYPSLRIEPNGRLVGYYFQGGRSTSEEID CGRQPLSNERSNCVPLKLPKCRNSSGLITGQEYPFMFESHLGVMASQGVKLSETENMTLEDCRQNCFEECSCAAFAATNADETGCEMWSSTFGFIRSLPN SHDQRQIYFIYQKKEWWIWVAIAVGLAFTIPPIVCFCYMLWINFKDEGNSHSILVFMATTSFDIILTQVKINVFTLIDDLVGPDLGKLNINLKSLLGLVE ENMLPNSSSGASRREEDDQNELKMFNFETITVATNYFCATNKLGEGGFGPVYKGQLANGQEIAIKRLSKSSEQGFVEFRNEVVLVAKLQHTNLVRLLGLC ILAGEMILVYEYMPNKSLDLILFDVERKSMLNWKKRFHIIEGIAQGLLYLHKYSRLKVIHRDLKASNVLLDDEMNPKISDFGMARIFGIKESETNTERIV GTYGYMSPEYALHGIVSVKVDVFSFGVLLLEIVSGRKNNSFYHFDGKPVMLIGYAWKLWNEGHGLELVDQTLEDCNVTNAMRCIHIGLLCVQEHATDRPT MSEVLTMLSNETIELLTPKQPVLFIGGIAHLGDIQIDDESHSRNTMTVSTMGAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10003156 [exp]	0	1
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	2.0	0.8522
					Lus10019165 [exp]	5.5	0.8820
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	9.3	0.8810
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	18.1	0.7674
AT4G34390		XLG2	extra-large GTP-binding protei...		Lus10009897 [exp]	20.6	0.8308
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	20.8	0.8526
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	21.5	0.8218
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	21.8	0.8439
AT4G33985			Protein of unknown function (D...		Lus10014064 [exp]	23.7	0.7392
AT1G01490			Heavy metal transport/detoxifi...		Lus10039285 [exp]	25.1	0.7599

Compare expression of checked genes

Lus10003156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.