Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17170 319 / 2e-110 ENH1 enhancer of sos3-1, rubredoxin family protein (.1.2) AT5G51010 61 / 3e-11 Rubredoxin-like superfamily protein (.1) AT1G55480 50 / 4e-07 ZKT protein containing PDZ domain, a K-box domain, and a TPR region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002349 [exp] 410 / 5e-146 AT5G17170 360 / 5e-126 enhancer of sos3-1, rubredoxin family protein (.1.2) Lus10010322 [exp] 59 / 6e-10 AT1G55480 401 / 1e-140 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10013403 [exp] 57 / 2e-09 AT1G55480 395 / 3e-138 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Lus10016735 [exp] 54 / 8e-09 AT5G51010 189 / 3e-62 Rubredoxin-like superfamily protein (.1) Lus10022430 [exp] 51 / 6e-08 AT5G51010 190 / 8e-63 Rubredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042600 [exp] 317 / 1e-109 AT5G17170 301 / 3e-103 enhancer of sos3-1, rubredoxin family protein (.1.2) Potri.015G108100 [exp] 62 / 7e-12 AT5G51010 160 / 5e-51 Rubredoxin-like superfamily protein (.1) Potri.003G222200 [exp] 48 / 3e-06 AT1G55480 405 / 4e-142 protein containing PDZ domain, a K-box domain, and a TPR region (.1) Potri.012G109700 [exp] 0 / 1 AT5G51010 0 / 1 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF00301 [flax] [poplar] Rubredoxin Rubredoxin
Representative CDS sequence Show only first row Show all	>Lus10003157 pacid=23147771 polypeptide=Lus10003157 locus=Lus10003157.g ID=Lus10003157.BGIv1.0 annot-version=v1.0 ATGGCGGCATCATCGTCATCTTCATCGGCCGTCTTCGCCGGCGCTTCCTCTTCCTTCACCAGAAACCACTGCTACCCTATCAAAACCACCGCAGCTCTAA CACTCCAGAAATCCCAATTCCAAGGGCTGTCGATTGGAGAAGCAAAACGGAGTAAGAGCATCAACAATGTCAGGGGAAGAAGAAGGCTGGAGATTACTGC TAGGACGACTTCGAAGAACATCGAAGTTGAAGTTGACAAGCCTCTCGGCCTCACCCTCGGCCAGAAGTCCGGCGGCGGCGTTGTCATCACGGCGGTAGAA GGGGGAGGGAATGCAGCAAAGGCAGGGCTGAAATCCGGAGACCAGGTGCTGTACACAAGCAGCTTCTTCGGGGATGAGCTATGGCCAGCTGATAAGCTTG GCTTCACGAAAACCGCGATCCAAGCTAAGCCCGACTCTGTCTACTTCGTCGTTAGCAGAGGAGGTGCAGATGTGGATGTTAAGAGATTGCCTAAGCGACC GGCTCCTCCCCGATTCGGCAGGAAGTTGACCGATACTCAAAAGGCTAGAGCTACTCACATTTGTATAGACTGTGGGTACATATACACATTGTCAAAGCCA TTCGAGGAGCAGCCGGAAGGATACGTATGCCCACAGTGCCTAGCGCCAAAAAAGAGGTTTGCCAAGTACGATGTGAACACGGGGAAGGCGATCGGAGGTG GGTTGCCCCCGATTGGGGTGATCATAGGGTTGCTTGCTGGTCTTGGTGGTGTTGGTGCATTGCTTGTCTATGGTCTTCAGTGA
AA sequence Show only first row Show all	>Lus10003157 pacid=23147771 polypeptide=Lus10003157 locus=Lus10003157.g ID=Lus10003157.BGIv1.0 annot-version=v1.0 MAASSSSSSAVFAGASSSFTRNHCYPIKTTAALTLQKSQFQGLSIGEAKRSKSINNVRGRRRLEITARTTSKNIEVEVDKPLGLTLGQKSGGGVVITAVE GGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSRGGADVDVKRLPKRPAPPRFGRKLTDTQKARATHICIDCGYIYTLSKP FEEQPEGYVCPQCLAPKKRFAKYDVNTGKAIGGGLPPIGVIIGLLAGLGGVGALLVYGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	0	1
AT5G57345			unknown protein		Lus10001438 [exp]	1.7	0.9614
AT5G57345			unknown protein		Lus10001632 [exp]	2.4	0.9548
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	2.8	0.9521
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	3.2	0.9457
AT1G05140			Peptidase M50 family protein (...		Lus10027190 [exp]	4.2	0.9446
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	4.9	0.9535
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10028969 [exp]	5.2	0.9422
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Lus10009352 [exp]	7.9	0.9435
AT2G27290			Protein of unknown function (D...		Lus10013320 [exp]	8.7	0.9304
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	9.8	0.9426

Compare expression of checked genes

Lus10003157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.