Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 427 / 3e-150 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 104 / 1e-24 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 74 / 2e-14 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 66 / 1e-11 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT4G21580 56 / 1e-08 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) AT5G61510 53 / 1e-07 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT3G56460 45 / 7e-05 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G65560 44 / 0.0002 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002347 [exp] 603 / 0 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 514 / 0 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 513 / 0 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038206 [exp] 384 / 4e-133 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 383 / 1e-132 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003159 [exp] 374 / 1e-127 AT4G13010 449 / 4e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 239 / 4e-78 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 123 / 1e-31 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 115 / 1e-28 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342800 [exp] 442 / 5e-156 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 441 / 2e-155 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 436 / 1e-153 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342900 [exp] 426 / 8e-150 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 346 / 2e-119 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 102 / 3e-24 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 94 / 2e-21 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.004G036100 [exp] 70 / 4e-13 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G373200 [exp] 68 / 2e-12 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.009G103000 [exp] 63 / 1e-10 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10003158 pacid=23147784 polypeptide=Lus10003158 locus=Lus10003158.g ID=Lus10003158.BGIv1.0 annot-version=v1.0 ATGGGGATCTTGATCGAGAGTCCTGGAAAGTTTGACAACCAGTCAAGAAGCAAGTCTTTTTGCCCTCAAATAACACAACAATCGCCGCCGCATTTTCCCG TTTCTCCGGCAGGAAAACAACCCAGAAAAGAAATGGCCACCGCTTCGAGTAGCGCGGTAGGGAAGAAGCTGATGCGCGCCCTTCAGTACGATAGCTGCGG CGGAGGAGCTTCAGCTCTCAAGCATGTTGAAGTTCCGATCCCGACTCCGGCGAAAGACGAGGTTTTGCTGAAACTGGAAGCGGTAAGTATCAATCCGATT AACTGGAAGGTTCAGAAGGGCATGCTCCGACCCTTTTTGCCGAGAAAATTACCTCGCATACCATGTGCTGATGTTGCTGGAGAAGTTGTAGAGGTGGGTT CAGAAGTCAAGAAGTTCAAATCCGGCGACAAAGTCGTTGCTTACCTTGGCATTTCTAACGAAGGAGGAATGGCTGAGTATGCAGCAGCCAAGGAAACCTG CTCCGTCGCTAGACCAGCCGAAGTTTCAGCTCCGGAAGGTGCATCGTTGCCAGTTGCAGGCATCACTGCTTACCAGTCCCTCACTCGGTTTGCCGGGGTG AAACTCGACGGAACCGGCCCTCAGAAGAACATTCTAGTAACTGCAGCCTCTGGTGGTGTGGGCCAGTATGCAGTCCAGCTTGCGAAGCTAGGAAACGCCC ACGTAACAGCCACATGCGGAGCTCGTAACATTGAGCTCGTCAAGGGTCTGGGAGCCGACGAGGTTCTCGACTACAAAACTCCCGAGGGAGCAGCGCTCAA GAGCCCCTCGGGAAAGAAGTACGACGCTGTCGTTCACTGCACGACCGGCATTCCATGGTCGACGTTCGATGGAAACTTGAGCGAGAATGGGAAGGTCATC GACCTTACACCAGGGCCGAGTTCGTTGTTGACTTTTGCATTGAAGAAGCTGACTTTCTCCAAGAAACAGCTGCTGCCTTTCCTTGCTGACATTAAAGATG AAGGATTGGAGGTGCTTGTGGATCTGGTTAAGGGGAAAAAGCTGAAGACGGTGATCGACTCGACATATCCGTTAAGCAAGGCTGAAGATGCTTGGGCTAA GAGCATCGATGGACACGCCACGGGGAAGATCGTCATCGAGCCTTAG
AA sequence Show only first row Show all	>Lus10003158 pacid=23147784 polypeptide=Lus10003158 locus=Lus10003158.g ID=Lus10003158.BGIv1.0 annot-version=v1.0 MGILIESPGKFDNQSRSKSFCPQITQQSPPHFPVSPAGKQPRKEMATASSSAVGKKLMRALQYDSCGGGASALKHVEVPIPTPAKDEVLLKLEAVSINPI NWKVQKGMLRPFLPRKLPRIPCADVAGEVVEVGSEVKKFKSGDKVVAYLGISNEGGMAEYAAAKETCSVARPAEVSAPEGASLPVAGITAYQSLTRFAGV KLDGTGPQKNILVTAASGGVGQYAVQLAKLGNAHVTATCGARNIELVKGLGADEVLDYKTPEGAALKSPSGKKYDAVVHCTTGIPWSTFDGNLSENGKVI DLTPGPSSLLTFALKKLTFSKKQLLPFLADIKDEGLEVLVDLVKGKKLKTVIDSTYPLSKAEDAWAKSIDGHATGKIVIEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003158 [exp]	0	1
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10027026 [exp]	2.6	0.9223
AT2G43330		ATINT1	inositol transporter 1 (.1)		Lus10025565 [exp]	8.0	0.8874
AT3G11690			unknown protein		Lus10016197 [exp]	10.9	0.8946
AT2G27180			unknown protein		Lus10013375 [exp]	12.0	0.9203
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10030092 [exp]	24.5	0.9082
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10019837 [exp]	26.7	0.9055
AT5G41761			unknown protein		Lus10012634 [exp]	32.7	0.9006
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10005997 [exp]	35.5	0.9052
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Lus10037065 [exp]	38.5	0.8699
AT3G02555			unknown protein		Lus10027224 [exp]	38.9	0.8601

Compare expression of checked genes

Lus10003158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.