Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13010 373 / 5e-128 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT1G23740 96 / 1e-21 AOR alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) AT3G15090 63 / 2e-10 GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G49670 61 / 1e-09 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT4G21580 52 / 3e-07 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038206 [exp] 424 / 3e-148 AT4G13010 451 / 3e-160 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025898 [exp] 419 / 3e-146 AT4G13010 446 / 1e-158 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10003158 [exp] 348 / 1e-117 AT4G13010 473 / 4e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002347 [exp] 346 / 3e-117 AT4G13010 468 / 8e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10025899 [exp] 327 / 8e-110 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10038205 [exp] 320 / 3e-107 AT4G13010 468 / 7e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10002346 [exp] 297 / 4e-100 AT4G13010 265 / 3e-89 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030873 [exp] 107 / 3e-25 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Lus10030615 [exp] 104 / 3e-24 AT1G23740 519 / 0.0 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G342900 [exp] 384 / 1e-132 AT4G13010 484 / 2e-173 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G342800 [exp] 380 / 6e-131 AT4G13010 513 / 0.0 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G452600 [exp] 362 / 7e-124 AT4G13010 469 / 1e-167 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G391100 [exp] 361 / 2e-123 AT4G13010 469 / 8e-168 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.001G343000 [exp] 287 / 2e-95 AT4G13010 369 / 2e-129 Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.016G136100 [exp] 99 / 1e-22 AT1G23740 504 / 9e-180 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.008G161600 [exp] 81 / 1e-16 AT1G23740 408 / 1e-142 alkenal/one oxidoreductase, Oxidoreductase, zinc-binding dehydrogenase family protein (.1) Potri.009G103000 [exp] 59 / 5e-09 AT1G49670 943 / 0.0 ARP protein (REF) (.1), ARP protein (REF) (.2) Potri.004G036100 [exp] 56 / 2e-08 AT4G21580 525 / 0.0 oxidoreductase, zinc-binding dehydrogenase family protein (.1.2.3) Potri.001G373200 [exp] 54 / 8e-08 AT3G15090 515 / 0.0 GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Lus10003159 pacid=23147777 polypeptide=Lus10003159 locus=Lus10003159.g ID=Lus10003159.BGIv1.0 annot-version=v1.0 ATGGCCAGCAAGGCACTAGCAGCTGCTGAGCTGGCACATTACTCACTGCCAAATCTGCCATCTTTCTTCATCGAACTCCATCCGCAAATCCCCGTTTCCA CAACAAATATTATTAAAACCCATTTACACTCGAAACATCTCTCCGTATCTCTTTTCCTCGTCGGCGGTAAAAACATGCCGGAGATGAAGCTGATGCACGC CCTCCGATACGATCGCTACGGTGGAGGACCCGCCGGTTTAAAGGTATTCCTAATCATCGTCCCCTTCCAATCTATTCGCCGGCCGATTGATTTATTTCTA ATTTCTGATCAAGGGGTTTATGCGTCTGTCTGTGTTTTGATTGGTGTTGGTATTGTAAAGCATGTTGAAGTTCCAGTCCCTGTGGCGAAGAAGGGCGAGG TTTTGGTGAAGGTGGAAGCTGTGAGTCTGAATCCAGTGGATTGGAAGATTCAGAAAGGAATGCTCAGACCTCTTCTCCCTTTCAGGTTTCCTCATATCCC CGGTAGTGATGTTGCTGGTGAGGTGGTGGAGGTTGGACCAGGTGTCAAGAAGTTCAGCCCTGGTGATAAAGTTGTAGGCATGGTCAATCATTTTACTGGA GGAGGACTAGCTGAGTATGCAGTATTCAAGGAGTCCATAACAGTGAAGAGACCAGCAGAAGTGTCGGCAGCTGAAGCCGCAGGACTACCAGTCGCTGCTC TAACAGCACACCAAGCTCTCACACAAGCTGCCGGAATCAAGCTTGACGGAAGTGGCCCCGCAAAGAACATCCTGATCACTGCCGGATCAGGCGGTGTAGG CCACTACGCAATCCAGCTAGCGAAACTCGCCACCAACGTCCACATAACCGCAACATGTGGCGCACGAAACATTCAACTCATCAAGAGCTTGGGAGCCGAC GAGGTCCTCGATTACAAGGCTCCAGCAGGGGTGGCACTCGAGAGTCCTTCGGGGCGAACGTACGATGCGGTCATCCACTGTGCGACTGGAATCCCCTGGT CAAGATTCGAGGCTAATCTGACTGAGAAGGGGAAGGTGGTCGACATCACGCCAAACTTCGTTGCAATTATGACCTCTGCTTTGAAGCAGCTCACCTGCTC TAAGAAGAAGCTGGTGCCTTTGCTCCTGATCCCGAAGGCTCGGAATCTTGAGTTCTTGCTCGAGCTGGTGAAGGAAGGAAAGGTGAAGACGCTGGTCGAT TCAAAGCATCCGTTGAGCAGAGGTGAAGATGCTTGGGCTGATATCATGGATGGTCATGCTACTGGGAAGATCATTGTTGAACCTTGA
AA sequence Show only first row Show all	>Lus10003159 pacid=23147777 polypeptide=Lus10003159 locus=Lus10003159.g ID=Lus10003159.BGIv1.0 annot-version=v1.0 MASKALAAAELAHYSLPNLPSFFIELHPQIPVSTTNIIKTHLHSKHLSVSLFLVGGKNMPEMKLMHALRYDRYGGGPAGLKVFLIIVPFQSIRRPIDLFL ISDQGVYASVCVLIGVGIVKHVEVPVPVAKKGEVLVKVEAVSLNPVDWKIQKGMLRPLLPFRFPHIPGSDVAGEVVEVGPGVKKFSPGDKVVGMVNHFTG GGLAEYAVFKESITVKRPAEVSAAEAAGLPVAALTAHQALTQAAGIKLDGSGPAKNILITAGSGGVGHYAIQLAKLATNVHITATCGARNIQLIKSLGAD EVLDYKAPAGVALESPSGRTYDAVIHCATGIPWSRFEANLTEKGKVVDITPNFVAIMTSALKQLTCSKKKLVPLLLIPKARNLEFLLELVKEGKVKTLVD SKHPLSRGEDAWADIMDGHATGKIIVEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	0	1
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	3.3	0.8863
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	5.3	0.8677
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	13.0	0.8850
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	14.1	0.8487
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	15.7	0.8452
AT1G24620			EF hand calcium-binding protei...		Lus10004330 [exp]	17.6	0.8131
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015740 [exp]	22.1	0.8713
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Lus10014239 [exp]	29.1	0.8577
AT2G16595			Translocon-associated protein ...		Lus10042391 [exp]	30.8	0.8556
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Lus10030398 [exp]	31.2	0.8298

Compare expression of checked genes

Lus10003159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.