Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09110 71 / 2e-14 Protein of unknown function (DUF674) (.1) AT3G09120 66 / 2e-12 Protein of unknown function (DUF674) (.1) AT5G01130 61 / 9e-11 Protein of unknown function (DUF674) (.1) AT5G01150 60 / 3e-10 Protein of unknown function (DUF674) (.1) AT5G01120 58 / 2e-09 Protein of unknown function (DUF674) (.1) AT3G09140 58 / 2e-09 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT5G01140 51 / 3e-07 Protein of unknown function (DUF674) (.1) AT5G43240 49 / 2e-06 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003167 [exp] 273 / 8e-93 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10003166 [exp] 235 / 6e-78 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003168 [exp] 228 / 5e-75 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 224 / 7e-74 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 164 / 5e-50 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 141 / 1e-42 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10040317 [exp] 74 / 6e-17 AT5G01140 39 / 1e-04 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 55 / 1e-09 AT2G40070 52 / 5e-09 unknown protein Lus10038209 [exp] 53 / 3e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210800 [exp] 157 / 2e-47 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 151 / 1e-45 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 140 / 2e-41 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210400 [exp] 126 / 4e-36 ND / Potri.008G050100 [exp] 122 / 4e-34 ND / Potri.010G210600 [exp] 94 / 1e-23 ND / Potri.001G247300 [exp] 69 / 4e-13 AT5G43240 176 / 5e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [flax] [poplar] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Lus10003163 pacid=23147797 polypeptide=Lus10003163 locus=Lus10003163.g ID=Lus10003163.BGIv1.0 annot-version=v1.0 ATGGAAACTGAAACCAAAGTCTCGCTGAAGCTCCTAATCAACAAGGAGACCAACAAGGTCCTGTTCGCCGAAGCAGGCAAGGATTTCGTCGATTTCCTAT TCACTCTCCTTTCGCTCCTGCTAGGAACGGTGATCAGGCTATTATCCAAGAAACAAATGGTTGGTTGCCTTGGAACTTTGTACCAGAGCATTGAAGAGTT GAGTGACAATTTCATCCAGCCTAGCAAGAGCAAGGACGCCGTGCTCAAGCCTAAATTCCAGTCCTGCACAACTGATAATAGCAACTTTTTGTTAACTGGA TGTAACAACAATGAAACATCAGCAGTACCAATTAGGAGGTATTACGTATGCTCAAACACCTATTCCAACCACACGAATGCCGTTGCTGATGATCCACAAG CCAATTGTCCTAGCTGCAACCATAAAATGAGGTCAGAAGTTAGCTTTGTTGCCACAGCTGCTGCTGCTGTAGGGAATAATCAAGGTGGGAATCTAAACAA TGAAGGTGGTGGGTTTGTGAAGGGAGTTGTGACATACATGGTGATGGACGATCTCGAAGTGAAGCCAATGTCCACCATCTCCAGCATTACTCTCCTCAAC AAGTTTAATATCCAGCAAGTCGGTTCTCTAGAAGAGAAAGTTATTGAGCTTGGCATGGACGAAGGGCTGAAACTGCTGAAGGCTTCTCTGCAGTCCAAGA CCGTCCTTACCAATGTTTTCCTCGGAGCATAA
AA sequence Show only first row Show all	>Lus10003163 pacid=23147797 polypeptide=Lus10003163 locus=Lus10003163.g ID=Lus10003163.BGIv1.0 annot-version=v1.0 METETKVSLKLLINKETNKVLFAEAGKDFVDFLFTLLSLLLGTVIRLLSKKQMVGCLGTLYQSIEELSDNFIQPSKSKDAVLKPKFQSCTTDNSNFLLTG CNNNETSAVPIRRYYVCSNTYSNHTNAVADDPQANCPSCNHKMRSEVSFVATAAAAVGNNQGGNLNNEGGGFVKGVVTYMVMDDLEVKPMSTISSITLLN KFNIQQVGSLEEKVIELGMDEGLKLLKASLQSKTVLTNVFLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09110			Protein of unknown function (D...		Lus10003163 [exp]	0	1
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10019185 [exp]	1.0	0.8376
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	1.7	0.7743
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	2.0	0.8296
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	9.6	0.7409
					Lus10035508 [exp]	11.4	0.7350
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	12.5	0.7350
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	13.5	0.7350
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	14.4	0.7350
AT4G34880			Amidase family protein (.1)		Lus10034477 [exp]	15.2	0.5966
					Lus10012269 [exp]	15.3	0.7350

Compare expression of checked genes

Lus10003163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.