Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09120 95 / 5e-23 Protein of unknown function (DUF674) (.1) AT3G09110 94 / 2e-22 Protein of unknown function (DUF674) (.1) AT5G01130 92 / 2e-21 Protein of unknown function (DUF674) (.1) AT3G09140 83 / 4e-18 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT5G01150 81 / 2e-17 Protein of unknown function (DUF674) (.1) AT5G01120 77 / 5e-16 Protein of unknown function (DUF674) (.1) AT5G43240 75 / 2e-15 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) AT5G01140 75 / 2e-15 Protein of unknown function (DUF674) (.1) AT5G37320 52 / 1e-07 Protein of unknown function (DUF674) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003168 [exp] 293 / 5e-101 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003167 [exp] 285 / 9e-98 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10003166 [exp] 276 / 4e-94 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003163 [exp] 246 / 2e-82 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 207 / 5e-67 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 140 / 1e-42 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10040317 [exp] 65 / 9e-14 AT5G01140 39 / 1e-04 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 50 / 5e-08 AT2G40070 52 / 5e-09 unknown protein Lus10038209 [exp] 40 / 0.0006 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210800 [exp] 202 / 2e-65 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 183 / 2e-58 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 155 / 5e-47 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050100 [exp] 128 / 1e-36 ND / Potri.010G210400 [exp] 121 / 2e-34 ND / Potri.001G247200 [exp] 99 / 7e-24 AT5G01120 189 / 8e-54 Protein of unknown function (DUF674) (.1) Potri.001G247300 [exp] 99 / 1e-23 AT5G43240 176 / 5e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) Potri.010G210600 [exp] 93 / 2e-23 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [flax] [poplar] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Lus10003164 pacid=23147783 polypeptide=Lus10003164 locus=Lus10003164.g ID=Lus10003164.BGIv1.0 annot-version=v1.0 ATGGCTACCCCTACCGCCACCACCAACAAAGTGACACTGAAGCTCCTGATCGACAAAAAGACGAAGCAAGTCCTGTTCGCAGAAGCAGGAAAGGAGTTCG TCGACTTCCTTTTCACGCTCCTCTCCTTCCCACTCGGAACGGTGATCAGGCTCCTATCCAAGAACAAGATGGTGGGTTCCCTAGGAAACTTGTACCAGAG CATCGAAGACTTGAGTGACACATTCATCCAGCCCACAACCACCAAGGACTCCGTTCTGAAGCCGACATCACCATTTTGCCCCGACGGCAGCAGCACTCTC TTGTTAGCCGACGGGGACAGTAATGGAAACACCACGTCCAAGACGTTCTACATGTGCTCTAGGTACCATTGTAATGTGTCTGATAGCACCAAAGCTATCT GTCCTCAGTGCAACAGTTCCATGGGCAACAAGGTTTCCTTTATTGCCCCGCGTGTTGTCACAAACAGTACTGAGACTGGTGGGTTTGTGAAGGGGGTTGT TACTTATATGGTAATGGATAACTTGGAGGTCAAGCCTATGCCAATGATCTCGAGCCTCACGTTGCTTAGTAAGTTCAATGTTCAGCAAGTTGGTACTCTT GAGGAGCGAGTCATTGAGCTTGGAATGGACCAGGGACTGAATCTGCTGAAGGCTTCTCTGCAGACCAAGAATGTCCTGACCTGTGTTTTCCTCGGAGCAT GA
AA sequence Show only first row Show all	>Lus10003164 pacid=23147783 polypeptide=Lus10003164 locus=Lus10003164.g ID=Lus10003164.BGIv1.0 annot-version=v1.0 MATPTATTNKVTLKLLIDKKTKQVLFAEAGKEFVDFLFTLLSFPLGTVIRLLSKNKMVGSLGNLYQSIEDLSDTFIQPTTTKDSVLKPTSPFCPDGSSTL LLADGDSNGNTTSKTFYMCSRYHCNVSDSTKAICPQCNSSMGNKVSFIAPRVVTNSTETGGFVKGVVTYMVMDNLEVKPMPMISSLTLLSKFNVQQVGTL EERVIELGMDQGLNLLKASLQTKNVLTCVFLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01130			Protein of unknown function (D...		Lus10003164 [exp]	0	1
					Lus10008923 [exp]	5.7	0.6661
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	14.0	0.6061
AT5G17850			Sodium/calcium exchanger famil...		Lus10034284 [exp]	14.0	0.6308
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	22.2	0.6029
AT2G29040			Exostosin family protein (.1)		Lus10001578 [exp]	23.5	0.5936
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029812 [exp]	26.5	0.5614
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	27.5	0.5926
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	28.1	0.5920
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10024816 [exp]	31.4	0.5705
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	33.2	0.5842

Compare expression of checked genes

Lus10003164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.