Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03200 1095 / 0 catalytics (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002341 [exp] 1446 / 0 AT4G03200 1118 / 0.0 catalytics (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209900 [exp] 1132 / 0 AT4G03200 1088 / 0.0 catalytics (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF03190 [flax] [poplar] Thioredox_DsbH Protein of unknown function, DUF255
Representative CDS sequence Show only first row Show all	>Lus10003165 pacid=23147789 polypeptide=Lus10003165 locus=Lus10003165.g ID=Lus10003165.BGIv1.0 annot-version=v1.0 ATGGCGTCTGATCCACCTACCGAAGGAACAAACCCCTCCACTTCCACAACCGCAGCCGCCCACTCCAACCGCCTCGCTGCTGAGCACAGCCCTTACCTCC TTCAGCATGCTCATAACCCAGTTAATTGGTATCCATGGGGCGAAGAAGCTTTCGCTGAAGCCAGGAGAAGAGACGTTCCTATCTTTCTTTCAATCGGTTA CAGCACATGCCATTGGTGTCATGTGATGGAGGTGGAGTCCTTTGAGGACGAGGTAGCTGCCAAATTGTTGAATGACTGGTTTGTCAGCATCAAGGTGTAT ATGACATTTGTTCAAGCCTTATATGGTGGTGGAGGATGGCCACTATCAGTGTTCCTTGCACCTGACTTGAAACCTTTGATGGGTGGCACTTACTTCCCCC CTGATGATAAGTTTGGTCGACCTGGCTTTAAGACAGTACTTAGAAAGGTGAAGGATGCTTGGGATACTAAGAGGGGAATGCTCCTTCAAAGTGGAACCTT TGCGCTCGAACAGCTCTCAGAAGCTTTAACAGCTGTTGCTACTTCAACTACGCTGAGCGATGGCGTGCCTCAAAATGCAATACGCCTTTGTGCAGAGCAG CTTTCTCAAAGCTACGATCCGCAGTATGGCGGGTTTGGTTCTGCTCCAAAGTTTCCTCGGCCGGTGGAGATCCAGCTGATGCTTTATAACTTCAAGAAAT TGGAGGATTCTGGGAAAATGGTTGAAGCAGAGGACAATAGGAAGAAGGCATTGTTCAGCTTGCAGTGCATGGCGAAAGGTGGCATCCATGATCACGTTGG AGGTGGCTTCCACAGATACAGCGTGGATGAACGCTGGCACGTTCCTCATTTTGAGAAAATGTTGTATGACCAAGGCCAACTTGCTAATGTATACTTGGAC GCCTTCGCTGTTACAAAGGACGAATTCTATGCACGGGTTTCTCGGGACATCCTCGATTATTTGAGGAGAGACATGATTGGAGCAGAAGGCGAAATCTTTT CAGCAGAAGATGCTGATAGTGCTGTACATGAAGGCACTAAAGTGAAGAAAGAAGGAGCTTTCTACATCTGGACCAGCAAAGAGGTTGACGATGTCCTTGG GGAGCATGCAAGCCTCTTTAAGGATCATTACTACGTAAAGCCTTCTGGAAACTGTGACCTCTCTCGAAAGAGCGATCCCCACAATGAGTTCAAGGGGCAA AATGTACTCATTGAGTTGAAAGATGCTCAGGATTTAGCATCGAAATATGATATGCCTATGGATAAATATCTCGAGATGCTGGGCGAATGCAAGCAGAAGC TGTTTGAAGTTAGATCAAGACGACCGAAACCACATTTAGATGACAAGGTCATTGTCTCATGGAACGGCCTCGTAATCTCAGCATTTGCAAGAGCTTCTAA AATTCTAAAGCATGAAAGTCCGAGTAAATACAATTTCCCTCTTACTGGCTGCGATCCAAAGGAATATTTAGAGGTTGCAGAAAAGGCCGCATCTTTTATC AGAAAGAACCTCTACAATGAACAAACTCGTAGACTCGAGCACAGTTTTAGAAAGGGCCCATCGAAAGCGCCTGCCTTTCTAGATGATTATGCCTTTCTGA TTTCCGGGTTGTTGGATCTTTATGAGTGCGGTGGTCAGACCAGTTTTCTTGTTTGGGCTGCTGAACTGCAGAAAACTCAGGATGAACTGTTCTTGGATAG AATAGGAGGTGGCTACTTCAATACTGCAGGGGAGGATCCTTCGGTTTTGCTTCGAGTGAAGGAAGACCATGACGGGGCAGAGCCATCTGGGAACTCGGTC TCGGCGATAAATCTCATAAGGTTGGCATCCATGACATCAGGGAATAAATCGAAGCACTACAGGCAGAATGCGGAGCATTTGTTGTCGGTTTTCGAGGCAC GGTTAAAAGACATGGCTGTGGCAGTACCCTTGATGTGTTGTGCGGCAGATATGGCCCTGGGGAGTCATCAGAAACAAATTGTGCTCGTAGGCCGGAAACA TTCTGGGGAATTCGACAGCATGCTTGCTGCTGCTCATGCATCATTCAACCCCAATAAAACCGTTGTTCATATTGATCCTAACGATGACGATGAAATGAAA ACGTGGGAAGGAAACCACAGCAATATTGCACAAATGGCGAAGAATAATAATGTTTCAGATGATAAGGTGGTGGCTCTCGTCTGTCAAAACTTCACTTGCA GTCCTCCGATGGCCGACCCTAGATCGCTGGAAACCTTGTTGTCCAAGAAACCTGCATGA
AA sequence Show only first row Show all	>Lus10003165 pacid=23147789 polypeptide=Lus10003165 locus=Lus10003165.g ID=Lus10003165.BGIv1.0 annot-version=v1.0 MASDPPTEGTNPSTSTTAAAHSNRLAAEHSPYLLQHAHNPVNWYPWGEEAFAEARRRDVPIFLSIGYSTCHWCHVMEVESFEDEVAAKLLNDWFVSIKVY MTFVQALYGGGGWPLSVFLAPDLKPLMGGTYFPPDDKFGRPGFKTVLRKVKDAWDTKRGMLLQSGTFALEQLSEALTAVATSTTLSDGVPQNAIRLCAEQ LSQSYDPQYGGFGSAPKFPRPVEIQLMLYNFKKLEDSGKMVEAEDNRKKALFSLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD AFAVTKDEFYARVSRDILDYLRRDMIGAEGEIFSAEDADSAVHEGTKVKKEGAFYIWTSKEVDDVLGEHASLFKDHYYVKPSGNCDLSRKSDPHNEFKGQ NVLIELKDAQDLASKYDMPMDKYLEMLGECKQKLFEVRSRRPKPHLDDKVIVSWNGLVISAFARASKILKHESPSKYNFPLTGCDPKEYLEVAEKAASFI RKNLYNEQTRRLEHSFRKGPSKAPAFLDDYAFLISGLLDLYECGGQTSFLVWAAELQKTQDELFLDRIGGGYFNTAGEDPSVLLRVKEDHDGAEPSGNSV SAINLIRLASMTSGNKSKHYRQNAEHLLSVFEARLKDMAVAVPLMCCAADMALGSHQKQIVLVGRKHSGEFDSMLAAAHASFNPNKTVVHIDPNDDDEMK TWEGNHSNIAQMAKNNNVSDDKVVALVCQNFTCSPPMADPRSLETLLSKKPA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03200			catalytics (.1.2)		Lus10003165 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	3.5	0.8230
AT5G15390			tRNA/rRNA methyltransferase (S...		Lus10032993 [exp]	7.1	0.8192
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	7.3	0.8044
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	10.4	0.7927
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	11.6	0.7803
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	15.0	0.7861
AT3G22520			unknown protein		Lus10006124 [exp]	19.3	0.7754
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	22.1	0.7890
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10038110 [exp]	25.8	0.7894
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	31.4	0.7512

Compare expression of checked genes

Lus10003165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.