Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09110 91 / 3e-21 Protein of unknown function (DUF674) (.1) AT5G01150 87 / 1e-19 Protein of unknown function (DUF674) (.1) AT5G01130 79 / 1e-16 Protein of unknown function (DUF674) (.1) AT5G01120 77 / 5e-16 Protein of unknown function (DUF674) (.1) AT3G09140 73 / 1e-14 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT3G09120 68 / 4e-13 Protein of unknown function (DUF674) (.1) AT5G43240 68 / 7e-13 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) AT5G01140 61 / 1e-10 Protein of unknown function (DUF674) (.1) AT5G37320 56 / 5e-09 Protein of unknown function (DUF674) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003167 [exp] 275 / 1e-93 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10003168 [exp] 258 / 6e-87 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 249 / 1e-83 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 239 / 3e-81 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10003163 [exp] 233 / 5e-77 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 172 / 2e-53 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10040317 [exp] 59 / 2e-11 AT5G01140 39 / 1e-04 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 47 / 1e-06 AT2G40070 52 / 5e-09 unknown protein Lus10038209 [exp] 47 / 3e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210800 [exp] 180 / 2e-56 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 162 / 1e-49 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 142 / 5e-42 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050100 [exp] 127 / 5e-36 ND / Potri.010G210400 [exp] 121 / 3e-34 ND / Potri.010G210600 [exp] 97 / 1e-24 ND / Potri.001G247300 [exp] 99 / 1e-23 AT5G43240 176 / 5e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) Potri.001G247200 [exp] 93 / 2e-21 AT5G01120 189 / 8e-54 Protein of unknown function (DUF674) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [flax] [poplar] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Lus10003166 pacid=23147790 polypeptide=Lus10003166 locus=Lus10003166.g ID=Lus10003166.BGIv1.0 annot-version=v1.0 ATGGCTACTCCGACCACTGCCGCCAAAATCAAACTGAAGCTTGTAATCAACAAGAAGGCGAAAAAGGTCCTGTTCGCTGAAGCAGGGAAAGATTTCGTGG ATTTCCTCTTCACTCTCCTTTCTCTCCCATTAGCAACAGTGATCAAGCTCTTAACCAAGAACAGAATGGTGGGTTGCCTTGGAAATCTGTACCAGAGCAT CGAAGAACTCAGCGAAACATTCATCCAATCCAGCACGAACAAGGACTCTGTTCTCAACCCAAAAGTCTACTCGCCCACAACAACTCAAAGCAACAAACTT TTCTTAACTTCCGGCGGTGACAGCAATGGAGGAGGAATATCAGCAGCAAATAGGAAGGTTTACATGTGCCCAAATAACCACAGGAATGTTGCAGATAACC CACGAACAATTTGTCCTAGATGCAACCGTTCTATGAGGTACGAAGCTTCCTTCATAGCCAGCAAGTATGAAGCTGAGCCTGGGAATAGTCAGGAGAATAA AGGTGGTGGGTTTGTGACGGGAGTTGTGACGTATATGGTGATGGACAACTTGGAGGTGAGGCCAATGTCGAACATCTCCACCATCACTCTGCTTAAGGAG TTCAATATCCAGCAAGTTAATGCCCTTGAGGAGAAAGTCATCGAGGTTGGGATGGATGAGGGGCTGAAGCTGCTCAAGGCTTCTATGCAGTCCAGGACTG TTCTCACCAATGTTTTACTCCGAGGATGGCTTGGTTGA
AA sequence Show only first row Show all	>Lus10003166 pacid=23147790 polypeptide=Lus10003166 locus=Lus10003166.g ID=Lus10003166.BGIv1.0 annot-version=v1.0 MATPTTAAKIKLKLVINKKAKKVLFAEAGKDFVDFLFTLLSLPLATVIKLLTKNRMVGCLGNLYQSIEELSETFIQSSTNKDSVLNPKVYSPTTTQSNKL FLTSGGDSNGGGISAANRKVYMCPNNHRNVADNPRTICPRCNRSMRYEASFIASKYEAEPGNSQENKGGGFVTGVVTYMVMDNLEVRPMSNISTITLLKE FNIQQVNALEEKVIEVGMDEGLKLLKASMQSRTVLTNVLLRGWLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09110			Protein of unknown function (D...		Lus10003166 [exp]	0	1
AT4G15420			Ubiquitin fusion degradation U...		Lus10031538 [exp]	1.0	0.8984
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	1.4	0.8940
AT2G12550		NUB1	homolog of human NUB1, ubiquit...		Lus10008818 [exp]	9.8	0.8643
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10042204 [exp]	21.6	0.7702
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014922 [exp]	25.1	0.8604
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10008689 [exp]	44.3	0.7628
					Lus10029451 [exp]	45.8	0.8187
AT4G17486			PPPDE putative thiol peptidase...		Lus10007844 [exp]	47.4	0.8419
AT3G10020			unknown protein		Lus10002842 [exp]	69.3	0.7935
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	72.8	0.7966

Compare expression of checked genes

Lus10003166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.