Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09110 96 / 5e-23 Protein of unknown function (DUF674) (.1) AT5G01130 90 / 1e-20 Protein of unknown function (DUF674) (.1) AT3G09120 87 / 5e-20 Protein of unknown function (DUF674) (.1) AT3G09140 85 / 1e-18 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT5G01150 84 / 2e-18 Protein of unknown function (DUF674) (.1) AT5G01120 81 / 2e-17 Protein of unknown function (DUF674) (.1) AT5G43240 77 / 3e-16 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) AT5G01140 75 / 2e-15 Protein of unknown function (DUF674) (.1) AT5G37320 59 / 8e-10 Protein of unknown function (DUF674) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003163 [exp] 297 / 2e-102 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10003166 [exp] 286 / 3e-98 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003168 [exp] 279 / 3e-95 AT5G01150 94 / 2e-22 Protein of unknown function (DUF674) (.1) Lus10003164 [exp] 277 / 1e-94 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 208 / 2e-67 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 146 / 8e-45 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10040317 [exp] 69 / 4e-15 AT5G01140 39 / 1e-04 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 52 / 1e-08 AT2G40070 52 / 5e-09 unknown protein Lus10038209 [exp] 52 / 6e-08 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210800 [exp] 196 / 6e-63 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.008G050000 [exp] 192 / 2e-61 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 172 / 1e-53 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050100 [exp] 131 / 9e-38 ND / Potri.010G210400 [exp] 124 / 3e-35 ND / Potri.010G210600 [exp] 101 / 2e-26 ND / Potri.001G247300 [exp] 100 / 2e-24 AT5G43240 176 / 5e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) Potri.001G247200 [exp] 100 / 3e-24 AT5G01120 189 / 8e-54 Protein of unknown function (DUF674) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [flax] [poplar] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Lus10003167 pacid=23147779 polypeptide=Lus10003167 locus=Lus10003167.g ID=Lus10003167.BGIv1.0 annot-version=v1.0 ATGGCGACCACCACCTCTAAAGTCACTCTGAAGCTACTAATCGACAGGAACAACAAAAGGGTCCTGTTCGCAGAAGCAGGCAAGGATTTCGTAGATTTCC TCTTCACCCTCCTTTCCTTACCACTAGGAACTGTGATCAAGCTCCTCTCCAAGAAAACAATGGTGGGCTGCCTTGGGAATTTGTACCAGAGCATTGAAGA ACTCAGCGACACTTTCATCCAACCTGGTGAAACCAAGGACTCTGTTCTCAATCCTAAGATCCAGTCTTCCACAACTGATGCCAACCTTTTGCTGACCGGC AGCTGTGACAACAACCGAACATCAGCAACTAGGAAGTTTTACTTGTGCAGATATTATACTGACTGCCATGAGCATGTTGCTGATAACCCACAAGCAATTT GTCCTAGCTGCAACGATAGGATGACCCATGAAGCTACCTTTGTTGCCACAGCTCCTACAGGGAATAATCAAGTTGGGAATCAGAACAATGAAGGCGGTGG GTTTGTGAAGGGAGTTGTGACATATATGGTGATGGACAATCTCGAAGTGAAGCCAATGTCTACAATCTCCAGCATCACTTTGCTCAACAAGTTCAACATC CAACAAGTTGGTGCTCTTGAGGAGCAAGTCATATCGGTTGGAATGGACGAGGGTTTGAAGCTCCTGAAGGCTTCCTTGCAGTCCAAGACAGTCCTCACCA GTGTTTTCCTCGGAGCTTGA
AA sequence Show only first row Show all	>Lus10003167 pacid=23147779 polypeptide=Lus10003167 locus=Lus10003167.g ID=Lus10003167.BGIv1.0 annot-version=v1.0 MATTTSKVTLKLLIDRNNKRVLFAEAGKDFVDFLFTLLSLPLGTVIKLLSKKTMVGCLGNLYQSIEELSDTFIQPGETKDSVLNPKIQSSTTDANLLLTG SCDNNRTSATRKFYLCRYYTDCHEHVADNPQAICPSCNDRMTHEATFVATAPTGNNQVGNQNNEGGGFVKGVVTYMVMDNLEVKPMSTISSITLLNKFNI QQVGALEEQVISVGMDEGLKLLKASLQSKTVLTSVFLGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09140			Protein of unknown function (D...		Lus10003167 [exp]	0	1

Compare expression of checked genes

Lus10003167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.