Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09110 86 / 1e-19 Protein of unknown function (DUF674) (.1) AT5G01130 86 / 5e-19 Protein of unknown function (DUF674) (.1) AT5G01150 86 / 6e-19 Protein of unknown function (DUF674) (.1) AT3G09120 76 / 4e-16 Protein of unknown function (DUF674) (.1) AT3G09140 76 / 2e-15 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) AT5G01120 73 / 1e-14 Protein of unknown function (DUF674) (.1) AT5G43240 71 / 8e-14 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) AT5G01140 66 / 4e-12 Protein of unknown function (DUF674) (.1) AT5G37320 49 / 2e-06 Protein of unknown function (DUF674) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003164 [exp] 261 / 4e-88 AT5G01130 95 / 6e-23 Protein of unknown function (DUF674) (.1) Lus10003167 [exp] 259 / 2e-87 AT3G09140 100 / 5e-25 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2) Lus10003166 [exp] 252 / 2e-84 AT3G09110 104 / 3e-26 Protein of unknown function (DUF674) (.1) Lus10003163 [exp] 215 / 3e-70 AT3G09110 100 / 2e-24 Protein of unknown function (DUF674) (.1) Lus10011225 [exp] 167 / 3e-51 AT5G01150 89 / 4e-20 Protein of unknown function (DUF674) (.1) Lus10002340 [exp] 114 / 5e-32 AT5G01150 47 / 4e-07 Protein of unknown function (DUF674) (.1) Lus10008717 [exp] 43 / 2e-05 AT2G40070 52 / 5e-09 unknown protein Lus10040317 [exp] 38 / 0.001 AT5G01140 39 / 1e-04 Protein of unknown function (DUF674) (.1) Lus10002348 [exp] 0 / 1 ND 71 / 1e-15
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G050000 [exp] 188 / 6e-60 AT3G09110 94 / 1e-22 Protein of unknown function (DUF674) (.1) Potri.010G210800 [exp] 160 / 6e-49 AT3G09110 86 / 2e-19 Protein of unknown function (DUF674) (.1) Potri.010G210500 [exp] 130 / 2e-37 AT3G09110 73 / 4e-15 Protein of unknown function (DUF674) (.1) Potri.008G050100 [exp] 95 / 8e-24 ND / Potri.010G210400 [exp] 94 / 2e-23 ND / Potri.001G247300 [exp] 85 / 8e-19 AT5G43240 176 / 5e-49 Protein of unknown function (DUF674) (.1), Protein of unknown function (DUF674) (.2), Protein of unknown function (DUF674) (.3) Potri.010G210600 [exp] 81 / 1e-18 ND / Potri.001G247200 [exp] 79 / 2e-16 AT5G01120 189 / 8e-54 Protein of unknown function (DUF674) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05056 [flax] [poplar] DUF674 Protein of unknown function (DUF674)
Representative CDS sequence Show only first row Show all	>Lus10003168 pacid=23147794 polypeptide=Lus10003168 locus=Lus10003168.g ID=Lus10003168.BGIv1.0 annot-version=v1.0 ATGGCAGCCACCTCCTCCAACTCCAAGGTCACCCTGAAGCTTCTGATCGACAAGAAGAGCAACAAAGTCCTGTTCGCAGAAGCAGGCAAGGAGTTCGTCG ATTTCCTTTTCACCCTCCTCTCCTTCCCACTCGGAAATGTGATCAAGCTCCTGACCAAAGACCGCATGGTCGGCTGCTTGGGAAATCTCTACCAGAGCAT TGAAGACTTAAGCGACACCTTCATCCAACCGAGCTCGGACAAGGACGCAGTCCTCAACCCTACTGCTCCATTCTGCATGTCCGAAAGCCCTCTTCTGCTG ACCGACGGCTGTGGAACAACTTCATTGAATCGGACGTTCTACATTTGCCCCGATTTCCACAAGTACGTGGCTGACAACCCGATAGCTGTTTGTCCTCAGT GCCGCAAGGGAATGAGGGGGGAGGTTCCCTTTGTCGCCCCGCCGCCTGCTGTCAAGGACAACGAGGAAGGTGGGTTTGTTAAAGGAGTTGTGACGTATAT GGTTATGGATGATCTCGAGGTGAAGCCGATGTCCACGATTTCGAGCTTGACTTTGCTTAGCAAGTTCAACATTCAGCAGGTTGGCGCCCTGGAGGAGCGA GTCATTGAGCTTCGAATGGAAGAGGTTGAAGAGAAAGTTGTTGAGGTTGGATTGGACGAGGGGCTGAAGCTGCTGAAGGTATCTCTGCAGTCCAACACTG CAGTGCTAACCACTGTTTTCCTTGGAGGTTGA
AA sequence Show only first row Show all	>Lus10003168 pacid=23147794 polypeptide=Lus10003168 locus=Lus10003168.g ID=Lus10003168.BGIv1.0 annot-version=v1.0 MAATSSNSKVTLKLLIDKKSNKVLFAEAGKEFVDFLFTLLSFPLGNVIKLLTKDRMVGCLGNLYQSIEDLSDTFIQPSSDKDAVLNPTAPFCMSESPLLL TDGCGTTSLNRTFYICPDFHKYVADNPIAVCPQCRKGMRGEVPFVAPPPAVKDNEEGGFVKGVVTYMVMDDLEVKPMSTISSLTLLSKFNIQQVGALEER VIELRMEEVEEKVVEVGLDEGLKLLKVSLQSNTAVLTTVFLGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	0	1
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	1.0	0.9991
					Lus10021217 [exp]	1.4	0.9982
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	2.4	0.9969
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	3.2	0.9958
AT1G76420	NAC	NAC368, CUC3, A...	CUP SHAPED COTYLEDON3, Arabido...		Lus10013205 [exp]	3.7	0.9945
					Lus10026293 [exp]	4.0	0.9962
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	6.0	0.9954
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	6.7	0.9885
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	7.1	0.9902
AT1G73620			Pathogenesis-related thaumatin...		Lus10031346 [exp]	7.3	0.9908

Compare expression of checked genes

Lus10003168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.