Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25220 211 / 3e-71 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G48580 207 / 9e-70 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT5G48570 106 / 2e-27 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 104 / 8e-27 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G45680 93 / 4e-24 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT4G39710 81 / 2e-19 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT3G55520 79 / 6e-19 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 81 / 1e-18 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT5G05420 74 / 1e-17 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 73 / 3e-16 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002339 [exp] 258 / 8e-90 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10025889 [exp] 209 / 8e-71 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10038215 [exp] 213 / 2e-68 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035800 [exp] 138 / 1e-42 AT5G48580 127 / 1e-38 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10002338 [exp] 105 / 5e-27 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 105 / 8e-27 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 103 / 2e-26 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 103 / 2e-26 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10006949 [exp] 89 / 1e-22 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248200 [exp] 216 / 2e-73 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.014G149400 [exp] 109 / 2e-28 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 105 / 7e-27 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.012G129200 [exp] 97 / 3e-24 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.001G075500 [exp] 91 / 5e-23 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.006G033400 [exp] 93 / 1e-22 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G130900 [exp] 89 / 3e-21 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2) Potri.008G057900 [exp] 79 / 6e-19 AT3G55520 236 / 7e-80 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G201600 [exp] 76 / 1e-17 AT3G55520 219 / 2e-73 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G079700 [exp] 76 / 3e-17 AT4G39710 243 / 1e-81 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10003170 pacid=23147780 polypeptide=Lus10003170 locus=Lus10003170.g ID=Lus10003170.BGIv1.0 annot-version=v1.0 ATGAATCGGAGCTCCGTATCGAAAGCTGCGGCGATCCTCTTCTTGCTGGCCGTGTCTTCATTAGTTTCCGCGAAGAAGTCCAAGGATGTGACAGAGCTAC AGATCGGCGTCAAGTTCAAACCCGAATCTTGTGAAATTCAGGCTCATAAGGGAGACAGGATCAAAGTACACTACCGGGGAATGCTCACTGATGGCACGGT TTTTGACTCCAGCTTTGAAAGGGGTGACCCATTTGAGTTTGAGCTTGGTGGTGGTCAAGTTATCAAAGGATGGGACCAGGGACTGCTGGGAACATGTGTA GGGGAGAAGCGGAAGTTGAAAATCCCTTCGAAACTCGGTTATGGTGACACAGGTTCTCCCCCAAAAATCCCAGGGGGAGCAACTTTGATATTCGACACGG AGCTTATAGCAGTCAACGGGAAGACAAACAGTGGAGAGACTGCTGCTGATAGTGAGTTGTAG
AA sequence Show only first row Show all	>Lus10003170 pacid=23147780 polypeptide=Lus10003170 locus=Lus10003170.g ID=Lus10003170.BGIv1.0 annot-version=v1.0 MNRSSVSKAAAILFLLAVSSLVSAKKSKDVTELQIGVKFKPESCEIQAHKGDRIKVHYRGMLTDGTVFDSSFERGDPFEFELGGGQVIKGWDQGLLGTCV GEKRKLKIPSKLGYGDTGSPPKIPGGATLIFDTELIAVNGKTNSGETAADSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10003170 [exp]	0	1
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	2.2	0.9283
AT3G60540			Preprotein translocase Sec, Se...		Lus10037570 [exp]	2.8	0.9215
AT5G20500			Glutaredoxin family protein (....		Lus10017148 [exp]	5.7	0.9198
AT3G60540			Preprotein translocase Sec, Se...		Lus10011428 [exp]	6.6	0.9073
AT5G47570			unknown protein		Lus10000735 [exp]	8.5	0.8877
AT5G49210			unknown protein		Lus10037138 [exp]	8.9	0.8856
AT5G16950			unknown protein		Lus10021093 [exp]	9.2	0.8925
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	9.5	0.9036
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10029155 [exp]	10.7	0.8734
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10011547 [exp]	11.2	0.8946

Compare expression of checked genes

Lus10003170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.