Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48570 782 / 0 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G25230 781 / 0 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G59240 280 / 3e-89 Ribosomal protein S8e family protein (.1) AT5G20290 269 / 6e-85 Ribosomal protein S8e family protein (.1) AT3G54010 181 / 3e-48 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G58450 112 / 2e-28 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48580 107 / 5e-27 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 101 / 1e-24 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT3G55520 94 / 9e-22 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G45680 83 / 1e-17 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002338 [exp] 1293 / 0 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025888 [exp] 872 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 870 / 0 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10025887 [exp] 297 / 2e-95 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10016587 [exp] 249 / 1e-76 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 221 / 4e-67 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1) Lus10022603 [exp] 169 / 4e-44 AT3G54010 831 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10021502 [exp] 155 / 1e-39 AT3G54010 847 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10003170 [exp] 106 / 1e-26 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248300 [exp] 835 / 0 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.014G149400 [exp] 781 / 0 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G033400 [exp] 535 / 0 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G117200 [exp] 528 / 9e-180 AT5G48570 553 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G360500 [exp] 293 / 2e-94 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 288 / 2e-92 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.017G110000 [exp] 287 / 6e-92 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 278 / 1e-88 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.016G105100 [exp] 181 / 2e-48 AT3G54010 825 / 0.0 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.002G248200 [exp] 104 / 5e-26 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0487 [flax] [poplar] PF01201 [flax] [poplar] Ribosomal_S8e Ribosomal protein S8e CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10003171 pacid=23147770 polypeptide=Lus10003171 locus=Lus10003171.g ID=Lus10003171.BGIv1.0 annot-version=v1.0 ATGGAGCAGGATTTCGATTTCCCGACTGCCGGCGACGACCTCATGGACGAGGACTTTGATTTGGGCGTCGGAGACGACGAAGTGGCCCCCGTTGTTCTCA AAGTCGGCGAGGAGAAGGAGATTGGGAAGCAAGGGCTGAAGAAGAAGCTCGTCAAGGAAGGCGAAGGCTGGGACACTCCCGATAGCGGCGACGAGGTTGA AGTTCATTACACGGGGACGTTGCTTGACGGGAGCAAGTTTGATTCCAGCCGTGATCGTGGGACGCCGTTCAAATTCACGCTAGGTCAAGGTCAAGTGATT AAAGGATGGGACCAGGGTATCAAGACGATGAAGAAGGGTGAAAATTCTGTTTTCACCATTCCTCCTGAGCTGGCTTATGGTGCTTCTGGCTCACCGCCAA CTATTCCACCGAATGCTACCCTTCAATTTGATGTCGAATTACTATCTTGGACTAGTGTCAAGGACATCTGTAAGGATGGTGGGATATTCAAGAAGATTGT TGTGGAAGGAGAGAAATGGGAGAACCCGAAGGACCTTGATGAAGTTTTTGTGAAGTATGAAGTCCAGCTGGAGGATGGTACTGTTGTTGCCAAGTCGGAT GGTATAGAATTTACAGTCCAGGAGGGCCATTTCTGTCCTGCGCTGTCCAAGGCTGTGAAGACGATGAAGAAAGGGGAGAAGGTTATCCTGACAGTGAAGC CTCAATATGGATTTGGAGAAACTGGGAAGCCTGCATCTGCTGATGGTCCAGCTGTTCCTGCTAATGCCACGTTGCAGATAAGCCTCGAATTAGTTTCATG GAAAACTGTTACTTCAGTAACTGATGACAAGAAGGTCATCAAGAAAATTCTGAAGGAAGGCGAGGGATATGAAAAGCCAAATGATGGCGCCGTGGTTCAA TTGAAACTGATTGGAAAGTTGCAAGATGGGACATTGTTCTTGAAGAAAGGTCACGATGATAATGACCAACTGTTTGAGTTCAGAACTGATGAAGAGCAAG TTATCGACGGTCTGGACAGAGCTGTGATGACAATGAAGAAAGGTGAGGTGGCTCTCCTCACCATCGCACCAGAGTACGCATTCAGGTCATCCGAATCGCA ACAGGAGATGGCTGTTGTCCCTCCGAACTCAACAGTTCACTACGAAGTTGAGTTGGTATCCTTCGTCAAGGAGAAGCAATCCTGGGACATGAACACACAG GAAAAAATCGAAGCTGCGGGAAAGAAGAAGGAAGAAGGAAACTTGAAGTTCAAGGCAGGCAAATACTTGAAAGCATCCAAAAGATACGAGAAGGCGGTGA AATACATAGACTACGACACGTCCTTCACCGAAGAAGAGAAGAAGCAGTCCAAGGCTTTGAAGGTGGCATGCAACCTAAACAACGCGGCCTGCAAGCTGAA GCTGAAGGAGTACAAAGCGGCGGAGAAGCTATGCACCAAGGTGCTGGAAATGGACAGCATGAACGTCAAGGCACTGTACAGAAGGGCGCAAGCTTACATC CAGCTGGTGGATCTCGAGCTGGCAGAATTTGACATCAAGAAGGCGCTGGAGATCGATCCGGAGAACAGGGATGTGAAGGCGGAGTATAGGGTGTTGAAGG AGAAGAAGAGGGAGTACAATAAGAAGGATGCCAAGTTCTACGGGAACATGTTCGCCAAGATGTTGGATTCTACAGTAAGTATTTCTAGGGACTCTCTGCA CAAGAGGCGCGCCACCGGAGGCAAGAAGAAGGTCTGGAGGAAGAAGCGAAAGTATGAGCTCGGACGTCAGCCAGCCAACACCAAGCTCTCGAGCAACAAG ACAGTGAGGAGGGTGCGTGTCAGAGGTGGCAATGTGAAGTGGAGGGCGCTGAGGTTGGATACCGGTAGCTTCTCTTGGGGAAGTGAGGCTGTATCTATGA AATGCCGTCTTCTTGATGTGGTGTACAATGCCTCCAACAATGAGCTTGTCAGGACTCAGACTTTGGTCAAGAGTGCCATCGTCCAAGTTGATGCTGCCCC GTTCAGGCAGTACTACCTTAACCACTATGGTGTTGAGGTTGGTAGGAAGAAGAAGGCTGTGGCCAAGACTGCTGAGGAAGGAGATGCTGCCGCTGCTGCT CCTGCAGCTGAGGAAGCGAAGAAGAGCAAGCATGTCCTGAGGAAGATTGAATCCCGCCAGAAGGATCGCCAGCTTGACCCCCACATTGAGGAGCAGTTCA GTGGTGGAAGGCTGTTGGCTTGCATTTCATCCCGACCAGGTCAATGCGGTAGAGCTGATGGGTACATATTGGAAGGTAAGGAGCTGGAGTTTTACATGAA GAAACTCCAGAGGAAGAAGGGCAAGGGTGCTGGTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10003171 pacid=23147770 polypeptide=Lus10003171 locus=Lus10003171.g ID=Lus10003171.BGIv1.0 annot-version=v1.0 MEQDFDFPTAGDDLMDEDFDLGVGDDEVAPVVLKVGEEKEIGKQGLKKKLVKEGEGWDTPDSGDEVEVHYTGTLLDGSKFDSSRDRGTPFKFTLGQGQVI KGWDQGIKTMKKGENSVFTIPPELAYGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVVEGEKWENPKDLDEVFVKYEVQLEDGTVVAKSD GIEFTVQEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGETGKPASADGPAVPANATLQISLELVSWKTVTSVTDDKKVIKKILKEGEGYEKPNDGAVVQ LKLIGKLQDGTLFLKKGHDDNDQLFEFRTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFRSSESQQEMAVVPPNSTVHYEVELVSFVKEKQSWDMNTQ EKIEAAGKKKEEGNLKFKAGKYLKASKRYEKAVKYIDYDTSFTEEEKKQSKALKVACNLNNAACKLKLKEYKAAEKLCTKVLEMDSMNVKALYRRAQAYI QLVDLELAEFDIKKALEIDPENRDVKAEYRVLKEKKREYNKKDAKFYGNMFAKMLDSTVSISRDSLHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNK TVRRVRVRGGNVKWRALRLDTGSFSWGSEAVSMKCRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFRQYYLNHYGVEVGRKKKAVAKTAEEGDAAAAA PAAEEAKKSKHVLRKIESRQKDRQLDPHIEEQFSGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAGAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	0	1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	1.4	0.9365
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10030482 [exp]	2.2	0.9441
AT5G06550			unknown protein		Lus10029343 [exp]	4.0	0.9356
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007396 [exp]	4.9	0.9361
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	5.7	0.9296
AT3G18190			TCP-1/cpn60 chaperonin family ...		Lus10026151 [exp]	5.9	0.9298
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030894 [exp]	8.2	0.8859
AT1G20300			Pentatricopeptide repeat (PPR)...		Lus10011459 [exp]	8.5	0.9224
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10004617 [exp]	11.0	0.9353
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	11.6	0.9287

Compare expression of checked genes

Lus10003171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.