Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07340 194 / 2e-58 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G48560 191 / 8e-57 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G23690 175 / 7e-52 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 174 / 2e-50 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 160 / 2e-46 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT4G34530 158 / 9e-46 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G59640 154 / 4e-45 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G50915 151 / 1e-43 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G10120 152 / 3e-43 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G62610 144 / 4e-41 bHLH bHLH079 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002337 [exp] 443 / 7e-156 AT5G48560 258 / 7e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10040448 [exp] 171 / 1e-50 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10023562 [exp] 170 / 1e-50 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10013052 [exp] 169 / 3e-48 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10029110 [exp] 169 / 3e-48 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10041261 [exp] 159 / 7e-47 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021968 [exp] 159 / 9e-47 AT3G23690 163 / 5e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030807 [exp] 156 / 9e-46 AT1G59640 300 / 6e-103 BIG PETAL UB, BIG PETAL P (.1.2) Lus10013284 [exp] 156 / 9e-46 AT1G59640 303 / 3e-104 BIG PETAL UB, BIG PETAL P (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G248500 [exp] 244 / 1e-76 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G235400 [exp] 194 / 3e-57 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 192 / 8e-57 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 170 / 2e-48 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.004G156000 [exp] 167 / 4e-48 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.008G113200 [exp] 167 / 2e-47 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.009G117300 [exp] 165 / 2e-47 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.010G040000 [exp] 152 / 1e-44 AT1G59640 273 / 1e-92 BIG PETAL UB, BIG PETAL P (.1.2) Potri.008G190800 [exp] 150 / 1e-43 AT1G59640 230 / 2e-75 BIG PETAL UB, BIG PETAL P (.1.2) Potri.015G104200 [exp] 152 / 2e-43 AT5G50915 163 / 9e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10003172 pacid=23147800 polypeptide=Lus10003172 locus=Lus10003172.g ID=Lus10003172.BGIv1.0 annot-version=v1.0 ATGGCGTCCCCGAGCGGCGGCGGAGGCGGCGGCAGCAAACTGCCGCGTGTCTCGAGCAGCCCTTCTCTTAAAGTGCTCGGATCTCAAAAGGGGAACAAAG GAGGCTCCCCTTCTCCTTCTCCGCTCGCTGAATTGCGTAATTCTTCTCCATCCCCTGAAGAATCATCCTTGTCGGAGCACCGGATTCCCATCTCCGCCGC CGACCCGAATCCCAAGAAAAGAAAATCAGCTCCCAAGGGTAAATCAGTCACTCAAGCCAATGCCGCCACCACTAAGGAAACTGAACCTCAGCAGAACCCA AATGCGAAGCGGAGCAAGGGAAACGGGAACCACGACGGCGGAGAACAGAGCAACAAGGCCAATTCAAAGGCCGCGGCGGCCGCAAAAGCGGCCGAAGAGG CCCCGAAGGATTATATCCATGTGAGGGCAAGAAGAGGTCAAGCAACTGACAGTCACAGTCTAGCTGAAAGAGTTCGACGGGAGAAAATCAGCGAAAGGAT GAAGTTTCTTCAGGATCTTGTTCCTGGCTGCAACAAGGTGACAGGGAAAGCTCTGATGCTGGATGAAATTATAAACTACGTGCAGTCATTGCAACGGCAA GTTGAGTTCCTATCCATGAAGATGGCGTCCGTTAACACAACCAGGCTGGATTTCAACTTGGACTCTCTCCCTGCGAAAGATATGTTTCAAGGAGGAGGGA TGTTCCAGATGGATTCAGCAGTAATGGGTCATCGTCAAAATCAGCAGCCAATGCATGAGACTGGCAGTGGCAGCGGCAGCTCTGCCACAGCGCAGTTTGA CCAGAATATCCTCAGCCTCCATAGCCAATTACCATCTCTCGATTCTTTCCACCATGACCAGTTTCAGACATTCTGTGACGAGGACCTCCAGAGCATTGTT CAGATGGCGACTAACATGCCGGAGGCAGCTTACTTAGGTAAAATTAAAATTAGTTGTGATTAA
AA sequence Show only first row Show all	>Lus10003172 pacid=23147800 polypeptide=Lus10003172 locus=Lus10003172.g ID=Lus10003172.BGIv1.0 annot-version=v1.0 MASPSGGGGGGSKLPRVSSSPSLKVLGSQKGNKGGSPSPSPLAELRNSSPSPEESSLSEHRIPISAADPNPKKRKSAPKGKSVTQANAATTKETEPQQNP NAKRSKGNGNHDGGEQSNKANSKAAAAAKAAEEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKALMLDEIINYVQSLQRQ VEFLSMKMASVNTTRLDFNLDSLPAKDMFQGGGMFQMDSAVMGHRQNQQPMHETGSGSGSSATAQFDQNILSLHSQLPSLDSFHHDQFQTFCDEDLQSIV QMATNMPEAAYLGKIKISCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10003172 [exp]	0	1
AT1G04200			unknown protein		Lus10039377 [exp]	2.4	0.8414
AT5G51710		ATKEA5, KEA5	K+ efflux antiporter 5, ARABID...		Lus10031106 [exp]	3.0	0.8244
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	3.3	0.8481
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10014894 [exp]	4.5	0.8222
AT3G26000			Ribonuclease inhibitor (.1)		Lus10037060 [exp]	9.2	0.7720
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	9.5	0.7951
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004550 [exp]	10.2	0.8143
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10032758 [exp]	12.2	0.8165
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	15.0	0.7504
AT1G04200			unknown protein		Lus10006619 [exp]	16.4	0.8167

Compare expression of checked genes

Lus10003172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.