Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002336 [exp] 127 / 8e-38 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003173 pacid=23147792 polypeptide=Lus10003173 locus=Lus10003173.g ID=Lus10003173.BGIv1.0 annot-version=v1.0 ATGGATTCAGACAATTATTTTAGGAATCTAGCGAGAAAAAGATTTGCAGAAAATACCCTAAATCAGCAAGGGGAAAGTCAGGCTCCTGCTACTACTGCTT CTGATGTTGTTTCTGTGAGGTCTGAGCCTGCTACTACTGCTTCTGATGTTGTTTCTGTGAGGTCTGAGCCTGCTACTACTGCTTCTGATGTTGTTTCTGT GAGGTCTGAGCCTGCTACTACTGCTTCTGATGTTGTTTCTGTGAGGTCTGAGCCTGCTACTACTGCTTCTGATGTTGTTTCTGTGAGGTCTGAGGCTGCT ACTGCTGACAGTAAAAGCGAAGTTGCTCAAGGTGACAGTACTGGGGCTGAGGCTGAGCAGCAGTTTGTGAAGCGGGGGACTTGGAACAAGAAGAAGCCAA AGAAGACCAAGTCTAAGAAGACCGGAGATGACTACAAGAAGGAGCAGCAGAAGGAAGAAGTGCCTGCAGAGGCTGCTGCGGAGAAGATGAACATCAATGA GTTTCTGAAGCCGGCGAAGAAGGGATACGGACGTCGGATATTCGACGACCACCGATCAGGTGGTAGGGTGGTGAACGGAAAAGTTAGTAAGGTTGCTGCA GAAGTGCCAGAGGACGGTTCCCTGGACTTGGGCGACTTCCCTGTGCTTGGAGCGGCAGGGCATAAGATTTTGTAG
AA sequence Show only first row Show all	>Lus10003173 pacid=23147792 polypeptide=Lus10003173 locus=Lus10003173.g ID=Lus10003173.BGIv1.0 annot-version=v1.0 MDSDNYFRNLARKRFAENTLNQQGESQAPATTASDVVSVRSEPATTASDVVSVRSEPATTASDVVSVRSEPATTASDVVSVRSEPATTASDVVSVRSEAA TADSKSEVAQGDSTGAEAEQQFVKRGTWNKKKPKKTKSKKTGDDYKKEQQKEEVPAEAAAEKMNINEFLKPAKKGYGRRIFDDHRSGGRVVNGKVSKVAA EVPEDGSLDLGDFPVLGAAGHKIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003173 [exp]	0	1
					Lus10002336 [exp]	4.2	0.9819
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	5.9	0.9858
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	6.6	0.9797
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	8.5	0.9830
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	10.1	0.9842
AT5G39160			RmlC-like cupins superfamily p...		Lus10032016 [exp]	10.4	0.9841
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10004223 [exp]	12.0	0.9790
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10022936 [exp]	12.2	0.9655
AT1G11925			Stigma-specific Stig1 family p...		Lus10020831 [exp]	17.0	0.9806
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	17.0	0.9821

Compare expression of checked genes

Lus10003173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.