Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07350 227 / 3e-73 Protein of unknown function (DUF506) (.1) AT3G25240 189 / 1e-58 Protein of unknown function (DUF506) (.1) AT1G12030 147 / 3e-42 Protein of unknown function (DUF506) (.1) AT1G62420 137 / 1e-38 Protein of unknown function (DUF506) (.1) AT4G14620 128 / 1e-34 Protein of unknown function (DUF506) (.1) AT2G39650 121 / 2e-32 Protein of unknown function (DUF506) (.1) AT3G22970 121 / 9e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 113 / 3e-29 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G32480 107 / 3e-27 Protein of unknown function (DUF506) (.1) AT3G54550 104 / 5e-26 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002335 [exp] 281 / 1e-96 AT3G07350 177 / 7e-56 Protein of unknown function (DUF506) (.1) Lus10035594 [exp] 145 / 4e-41 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1) Lus10003258 [exp] 143 / 2e-40 AT1G62420 179 / 2e-54 Protein of unknown function (DUF506) (.1) Lus10024840 [exp] 134 / 1e-36 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 134 / 3e-36 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10014718 [exp] 133 / 3e-36 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 131 / 3e-35 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 132 / 4e-35 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10003087 [exp] 130 / 8e-35 AT3G22970 318 / 7e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184700 [exp] 275 / 2e-92 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1) Potri.009G144600 [exp] 273 / 1e-91 AT3G07350 271 / 1e-90 Protein of unknown function (DUF506) (.1) Potri.004G001400 [exp] 154 / 9e-45 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.011G023301 [exp] 139 / 7e-39 AT1G62420 195 / 1e-60 Protein of unknown function (DUF506) (.1) Potri.008G159800 [exp] 126 / 2e-33 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.002G046300 [exp] 125 / 2e-33 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 125 / 3e-33 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.007G109700 [exp] 119 / 7e-32 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 118 / 8e-32 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G056100 [exp] 119 / 1e-31 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10003174 pacid=23147786 polypeptide=Lus10003174 locus=Lus10003174.g ID=Lus10003174.BGIv1.0 annot-version=v1.0 ATGGTGCTTAGAGGAACTTGTGCACGAGCCAAACGAGTCACTGACCCGCTCGACGACCGCGCCAGAGCTCGCCTCATCGGCGGATTCGACCAGCTCAGCT ACGTCAGCAGCGGCAGCGAACACTCCGCCGTCGATGTCGACGTGGACGATGATGACTCCCCCTGCCTTTCCAATCTCGTCCAATGCTTCCTCGAAGCGGA AGCCGATTCATCATCTCCTGCTTACGAATCCGATGACCAGACCGAGTCCGTCTCCGATTCCGCCGATTGCATCGGTGGAATCTCCATAATCGCTGAAATA ATCGCTCTAGGTGCCGATTCAGTACGGGATCTTCTATCGGCGCATGTTTTTGAGGCGGTGGAGGCGTCTTCTGTGTTTCATGACCAGAGACCGACCTTGA GGCGGAAGGTGATGTCGTACTTGAGAGAATCGGGGCGCAATGCGGGGATCTGCAAGACGCGGTGGGACTCAACGGGAGGATTGACATCCGGCAGCTACGA ATTCATCGATGTATTGGTTTCCAACAACCACCGCTACATAGTGGATCTGGAATTCGCGTCGCAGTTCGAGATCGCGAGGCCGACTGCTCACTACCAGAGG CTGATGGAATCGCTGCCAAAGGTCTTCGTCGGGAGCGTCGAGGATCTGAAGAGGATCGTGAGGACGATGAGCGACGCCGCGAGGAAGTCGCTGAAGTCCA GGAAGCTGTCTCTGCCTCCGTGGAGGAAGAATCGGTACATGATCAACAAATGGCTCGGGCCGTACAAGCGGACGGTAAATTCAACGCCGGATATCAGGTC GTTTCCTGCGGTGATCGGTCAGGTGGTTAGTGAGCAATGCAGATTCGTCGGGTTTGGCGTCGGCGTCGGTAGCCGGCTAGCTGTTCGTACTTGA
AA sequence Show only first row Show all	>Lus10003174 pacid=23147786 polypeptide=Lus10003174 locus=Lus10003174.g ID=Lus10003174.BGIv1.0 annot-version=v1.0 MVLRGTCARAKRVTDPLDDRARARLIGGFDQLSYVSSGSEHSAVDVDVDDDDSPCLSNLVQCFLEAEADSSSPAYESDDQTESVSDSADCIGGISIIAEI IALGADSVRDLLSAHVFEAVEASSVFHDQRPTLRRKVMSYLRESGRNAGICKTRWDSTGGLTSGSYEFIDVLVSNNHRYIVDLEFASQFEIARPTAHYQR LMESLPKVFVGSVEDLKRIVRTMSDAARKSLKSRKLSLPPWRKNRYMINKWLGPYKRTVNSTPDIRSFPAVIGQVVSEQCRFVGFGVGVGSRLAVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07350			Protein of unknown function (D...		Lus10003174 [exp]	0	1
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	10.4	0.8395
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	12.0	0.8467
AT2G17990			unknown protein		Lus10028465 [exp]	12.4	0.7921
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	42.1	0.8107
AT5G03230			Protein of unknown function, D...		Lus10019936 [exp]	45.3	0.7104
AT5G43300		AtGDPD3	glycerophosphodiester phosphod...		Lus10011337 [exp]	56.0	0.7755
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	61.7	0.8010
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	69.1	0.7987
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007900 [exp]	69.5	0.7852
AT4G32600			RING/U-box superfamily protein...		Lus10008106 [exp]	75.5	0.7306

Compare expression of checked genes

Lus10003174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.