Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 819 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 557 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 538 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 523 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 488 / 1e-166 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 465 / 3e-158 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 395 / 1e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 394 / 2e-131 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT2G44120 70 / 3e-13 Ribosomal protein L30/L7 family protein (.1.2) AT3G13580 69 / 5e-13 Ribosomal protein L30/L7 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037640 [exp] 915 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 914 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 621 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 601 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 599 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 533 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 530 / 0 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 529 / 0 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 525 / 0 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200800 [exp] 954 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 931 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G111500 [exp] 644 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 461 / 8e-157 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 411 / 1e-138 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G168100 [exp] 376 / 1e-123 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 286 / 5e-89 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 284 / 3e-88 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 90 / 4e-21 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G250900 [exp] 71 / 1e-13 AT3G13580 414 / 2e-148 Ribosomal protein L30/L7 family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10003176 pacid=23145152 polypeptide=Lus10003176 locus=Lus10003176.g ID=Lus10003176.BGIv1.0 annot-version=v1.0 ATGACCATCGACCCTCATTTCATGGAGGCAAACGACTTCCTCTTGCCATTTAAGTTGAGCACTCCCTTGGGTGGATTGAAGAAGATGCTTAACCATTATG TCGAAGGCGATGATGCTGGAAACTGGAAGAAGGAGGACTACTACGAGTTCAAGTACCCATTCATAAGGAAAGCAAGCACATTTTCATCATCATCTTCATT CTCATCAAGTGGCACAGCAGCAGACAAGTCGTACGACTACATAATTGTAGGTGGGGGAACAGCTGGTTGCCCTCTTGCAACAACACTCTCTCGCAAATTC TCAGTTCTTCTGCTGGAAAGAGGAGGAGTCCCTTTCTCCAATTCCAATGTCACCTTCCTCAGGAACTTCCACATTGCTTTGGCTGATACATCCCCAACCT CTGCTTCCCAGTACTTTGTCTCAACCGATGGTGTTCTAAATGCCAGAGCCAGAGTTTTGGGTGGTGGCACTTCAATCAATGCTGGCTTCTACACTAGAGC TAACCAAAGGTTTATAGAAAAAGTTGGGTGGGACACAAGGTTGGTGAATGAGTCATACCCATGGGTTGAAAAGCAAATAGTCCACAGGCCTCAGGTGGAA CCATGGCAGGTTGCTGTTAGGGACAGTCTGCTAGATCTTGGAGTTTCACCTTTCAATGGCTTCACCTATGACCACATCTACGGTACCAAGTTCGGAGGTA CCATTTTCGACAGGTTCGGGCGTAGGCACACAGCTGCAGAACTCCTTGCGACTGCCAACCCTCGGAGGCTCACTGTGTTGGTCCATGCCACAGTCCAGAG GGTTGTATTTGACACGTCAGGGAGGATGCCAAAGGCTGTTGGTGTTGTTTTCAAGGATGAAAAGGGGAACCAGCATCAGGCATTTCTTGCAAGTAATCCG AGGAGTGAAGTCATACTCTCCTCTGGAGCCATTGGTACTCCTCAGATGATGTTGCTTAGTGGGATTGGACCAAAATCTGACCTCGAAAAGTTGAACATTC CAATTGTGTTGGATAGCAAGTATGTCGGGAAGGGAATGGCTGATAATCCGATGAACGCTATTTTCATACCATCAAACATGCCTATAAACCAGTCCCTTAT ACAGACGGTTGGGATCACTAAGTTGGGTGTGTACATTGAAGCTAGCAGTGGATTTGGAGAGTCCAAGGACAGTATAGAATGTCACCATGGGATCATGTCT GCAGAGATAGGACAGCTATCGACAATTCCTCCGAAGCAAAGGACAGCTGAAGAAGTCCAAGCTTACATTCACAGGAAGAAGGAGTTGCCACATGAAGCAT TCAAAGGAGGTTTCATTCTTGAAAAGATTGCCAAACCAATTTCCACAGGTCAACTCAGCTTGGCCAACACAAATGCTGATGACAACCCATCTATATCATT CAACTACTTCAGCCATCCCAAGGACCTGGAGCGCTGCGTCGATGGGATTCGATTGGCTACAAAGATGGTTCAGTCAAAGCCCTTCACAGATATGTTGAAG TGTGACAAGCAGACTACTGAGAAGATACTTAATGCTAGTGTGCATGCCAATGTTAACTTGGTTCCCAAGCATCCCAACGATACAAAGTCCCTGGAGCAGT TCTGCAGAGACACTGTGATCACCATCTGGCACTACCATGGTGGTTGTCATGTCGGAAAAGTGGTGAACCCAGAGAATAAAGTTATCGGTGTCCATAGGCT TCGCATTGTTGATGGATCAACCTTTGATGAATCCCCAGGGACTAATCCCCAAGCCACTGTCATGATGATGGGGAGGTACATGGGGCTGAAGATTTTGCAA GACAGACTGGGAAAAGCGGCAGGAGTGTGA
AA sequence Show only first row Show all	>Lus10003176 pacid=23145152 polypeptide=Lus10003176 locus=Lus10003176.g ID=Lus10003176.BGIv1.0 annot-version=v1.0 MTIDPHFMEANDFLLPFKLSTPLGGLKKMLNHYVEGDDAGNWKKEDYYEFKYPFIRKASTFSSSSSFSSSGTAADKSYDYIIVGGGTAGCPLATTLSRKF SVLLLERGGVPFSNSNVTFLRNFHIALADTSPTSASQYFVSTDGVLNARARVLGGGTSINAGFYTRANQRFIEKVGWDTRLVNESYPWVEKQIVHRPQVE PWQVAVRDSLLDLGVSPFNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLATANPRRLTVLVHATVQRVVFDTSGRMPKAVGVVFKDEKGNQHQAFLASNP RSEVILSSGAIGTPQMMLLSGIGPKSDLEKLNIPIVLDSKYVGKGMADNPMNAIFIPSNMPINQSLIQTVGITKLGVYIEASSGFGESKDSIECHHGIMS AEIGQLSTIPPKQRTAEEVQAYIHRKKELPHEAFKGGFILEKIAKPISTGQLSLANTNADDNPSISFNYFSHPKDLERCVDGIRLATKMVQSKPFTDMLK CDKQTTEKILNASVHANVNLVPKHPNDTKSLEQFCRDTVITIWHYHGGCHVGKVVNPENKVIGVHRLRIVDGSTFDESPGTNPQATVMMMGRYMGLKILQ DRLGKAAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	1.0	0.9870
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	1.7	0.9613
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	2.0	0.9616
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	2.8	0.9529
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	5.5	0.9412
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	5.5	0.9306
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	6.3	0.9495
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	6.7	0.9246
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	9.5	0.9355
AT1G04650			unknown protein		Lus10011755 [exp]	11.4	0.9252

Compare expression of checked genes

Lus10003176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.