Plant FIBer expression Database

Lus10003178 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21070 743 / 0 NADK1, ATNADK-1 NAD kinase 1 (.1.2)
AT1G21640 278 / 1e-82 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009958
[exp]
978 / 0 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2)
Lus10000856
[exp]
276 / 4e-82 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2)
Lus10029717
[exp]
268 / 7e-79 AT1G21640 1154 / 0.0 NAD kinase 2 (.1.2)
Lus10028677
[exp]
249 / 5e-71 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G051500
[exp]
827 / 0 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2)
Potri.001G256100
[exp]
810 / 0 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2)
Potri.002G078700
[exp]
280 / 4e-83 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2)
Potri.005G182600
[exp]
277 / 2e-82 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0240 PFK PF01513 NAD_kinase ATP-NAD kinase
Representative CDS sequence
>Lus10003178 pacid=23144365 polypeptide=Lus10003178 locus=Lus10003178.g ID=Lus10003178.BGIv1.0 annot-version=v1.0
ATGGCTCCCAGCCAGCTCAATTCCACTGATGCTTCTGGAGATGTCAACTGTCCAAGGCCCCGTCCGGAGAATGGGGTCATTGATAATGGTGATTCACTGT
CTATATTCCATTCTGAGAAGGCGGTGCAGGAGCTTCTTCAACAGACTCCACTCCAGGGAAACGATGATCATCTTGTAGAGTTTTCTGAGGCTCTAAGAAC
TGTTGCCAAGGCGCTGAGGCGAGCAGCTGAAGGAAAGGCTTCTGCTCAGGCTGAGGCAACGGAATGGAAGCGTCGATATGAACTGGAGATGGCTCGGAAT
CGTAAAGTCAGGGATTTGGTTGGTTCCTTAATTGAGCATGATAATAGAGACCATAGAATTGCTCATCGTGTTAGTTTCCTTCTCTCTTTAGTAACGAGTT
TGACAGGTTGTACTGCAGAACCATCTCACAGGGAGCTGGATAATGATATTGATGATCAAAGGATAGAGGTACCAGCCATCGTATCTTTGCCGGGAAATCA
GGTAAATGGACTATCTGAAGATTTCTTGGTAAATGGGATTTGCTCTCACGAAATTCTCCAGGATGGAGAGGCTGGCCCTGATCCAAATGCTGTTCGAAAC
AGAATGTTGAGAAAGGCATCTTTTAAACTTTCCTGGTGGTGCAAGGGTGACAATGGTGATCAGCACAAACATGATATTGTATCATTTGAAAAAGGAAACA
TCACAACTGCAGGACGCACCAGTAAACAGATTTCTTTGAAGTGGGAGTCCAAGCCGCAGACTGTGCTTATAATGAGCAAACCAAATTCAGTTTCTGTTCG
GATTCTATGTGCACAAATGGTCAGATGGTTGAAAGAACATCAAAAGTTGAATATTTTTGTGGAACCACGTGTGAAGGCTGAACTTCTAGCCGAGTCGTCT
TATTTCAAGTTTGTGCAGACTTGGAAAGATGCTGACGAATTAGCTGTTTACTCTGCAGACACTGAGATTTCACTCCTTCACACAAAGATGGACCTTGTAG
TGACTCTCGGCGGTGATGGTACAGTTCTTTGGGCTGCATCAATGTTCAAAGGACCGGTTCCTCCCATCGTCCCGTTTTCTTTAGGATCTCTCGGCTTTAT
GACACCATTCCACAGCGAGCACTACAGGGATTGCCTTGATTCAGTTCTGAGGGGTCCGGTCAGTATAACATTGCGGCACCGACTGCAGTGCTATGTTATT
AGAGATGCAGCTAAAAATGAGTATGAAACCGAGGAGCCAATACTTGTGTTGAACGAGGTAACAATTGATCGTGGGATATCGTCGTACCTCACGAACTTGG
AGTGTTACTGTGACAACTCTTTTGTCACATGTGTCCAAGGAGACGGTTTGATTCTATCAACTACATCTGGCAGCACCGCATACTCGTTAGCAGCTGGAGG
ATCAATGGTTCATCCACAGGTGCCTGGGATCCTCTTCACGCCAATTTGTCCGCATTCCTTGTCATTTAGGCCTCTGATACTTCCCGAGAACGTCACGATA
CGAGTCCAAGTTCCTTTCAATAGCAGAAGCCCTGCTTGGGCATCATTCGACGGGAAAGACAGGAAACAGTTGGAGGCCGGTGATGCACTTGTTTGCAGCA
TGGCGCCCTGGCCTGTGCCAACGGCATGTTCAGTGGATTCTACGGGCGATTTCCTCCGCAGCATCCACGAGGGTCTTCATTGGAATCTGAGAAAGACTCA
ATCTTTCGATGGCCCTCGTGAATCGTGA
AA sequence
>Lus10003178 pacid=23144365 polypeptide=Lus10003178 locus=Lus10003178.g ID=Lus10003178.BGIv1.0 annot-version=v1.0
MAPSQLNSTDASGDVNCPRPRPENGVIDNGDSLSIFHSEKAVQELLQQTPLQGNDDHLVEFSEALRTVAKALRRAAEGKASAQAEATEWKRRYELEMARN
RKVRDLVGSLIEHDNRDHRIAHRVSFLLSLVTSLTGCTAEPSHRELDNDIDDQRIEVPAIVSLPGNQVNGLSEDFLVNGICSHEILQDGEAGPDPNAVRN
RMLRKASFKLSWWCKGDNGDQHKHDIVSFEKGNITTAGRTSKQISLKWESKPQTVLIMSKPNSVSVRILCAQMVRWLKEHQKLNIFVEPRVKAELLAESS
YFKFVQTWKDADELAVYSADTEISLLHTKMDLVVTLGGDGTVLWAASMFKGPVPPIVPFSLGSLGFMTPFHSEHYRDCLDSVLRGPVSITLRHRLQCYVI
RDAAKNEYETEEPILVLNEVTIDRGISSYLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPICPHSLSFRPLILPENVTI
RVQVPFNSRSPAWASFDGKDRKQLEAGDALVCSMAPWPVPTACSVDSTGDFLRSIHEGLHWNLRKTQSFDGPRES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G21070 NADK1, ATNADK-1 NAD kinase 1 (.1.2) Lus10003178
[exp]
0 1
AT3G21070 NADK1, ATNADK-1 NAD kinase 1 (.1.2) Lus10009958
[exp]
1.4 0.8704
AT2G28305 ATLOG1 LONELY GUY 1, Putative lysine ... Lus10021462
[exp]
2.0 0.8752
AT5G51630 Disease resistance protein (TI... Lus10012028
[exp]
2.8 0.8107
AT1G24110 Peroxidase superfamily protein... Lus10029201
[exp]
4.9 0.8057
AT4G09760 Protein kinase superfamily pro... Lus10028696
[exp]
5.9 0.8273
AT5G17680 disease resistance protein (TI... Lus10041060
[exp]
6.0 0.8446
AT5G38220 alpha/beta-Hydrolases superfam... Lus10028497
[exp]
13.0 0.7764
AT3G09830 Protein kinase superfamily pro... Lus10038711
[exp]
14.5 0.8082
AT4G17720 RNA-binding (RRM/RBD/RNP motif... Lus10030952
[exp]
15.1 0.7491
AT5G67140 F-box/RNI-like superfamily pro... Lus10024178
[exp]
17.4 0.7907

Lus10003178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.