Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12460 222 / 1e-70 Protein of unknown function (DUF604) (.1) AT5G41460 166 / 1e-48 Protein of unknown function (DUF604) (.1) AT4G00300 168 / 4e-48 fringe-related protein (.1.2) AT1G01570 163 / 7e-48 Protein of unknown function (DUF604) (.1) AT4G23490 164 / 8e-48 Protein of unknown function (DUF604) (.1) AT4G11350 162 / 2e-47 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT1G07850 162 / 6e-47 Protein of unknown function (DUF604) (.1) AT4G15240 156 / 3e-45 Protein of unknown function (DUF604) (.1) AT2G37730 152 / 4e-43 Protein of unknown function (DUF604) (.1) AT1G05280 149 / 1e-42 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009957 [exp] 355 / 5e-122 AT5G12460 439 / 3e-151 Protein of unknown function (DUF604) (.1) Lus10027356 [exp] 214 / 4e-67 AT5G12460 398 / 2e-135 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 174 / 9e-52 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 170 / 2e-50 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 161 / 3e-47 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 162 / 5e-47 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 160 / 8e-47 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 158 / 1e-45 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10024364 [exp] 154 / 1e-45 AT2G37730 405 / 1e-139 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G051600 [exp] 261 / 3e-85 AT5G12460 459 / 4e-159 Protein of unknown function (DUF604) (.1) Potri.001G256200 [exp] 253 / 3e-82 AT5G12460 444 / 2e-153 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 174 / 5e-52 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 166 / 1e-48 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 160 / 2e-46 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 159 / 5e-46 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 159 / 5e-46 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 157 / 2e-45 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 157 / 2e-45 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 153 / 6e-44 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10003179 pacid=23144366 polypeptide=Lus10003179 locus=Lus10003179.g ID=Lus10003179.BGIv1.0 annot-version=v1.0 ATGGGGTTTGGTGGAGCTGGATATGCCTTGAGCTACCCTTTAGTTGAGGCATTGTCGAGTAAGCTTGATGATTGCATTGAGAGATATACAGATGTGTTTG TTAGTGATGCCTTGGTTCAGTCCTGTTTGGCTGATCTTGGTGTTGCTGTTACCCATCAAAAGGGGTTTCACCAGTTTGACCTTCATGGTGACATCTCAGG CATCCCATCAGCACATCCACAATCCCCCTTAGTAAGCCTCCATCACTTCGACCACATAGACCCAATCTTCCCCTCTATGGACCGTCCTCAAGCAATCCAA CACCTCATGAAGGCTGCCGAAATCGATCAATCTCGTATCTCGCAGCAGACAATCTGCTACCAGAGACAGAGCAACTGGTCTATCTCAGTGTCCTGGGGAT ACTCTGCATACATTTACGAGAACATCATCCCTAGAAGCTCGCTGATCAAGCCGTCGAGACATTTAAGCCGTGACATGCTGCAAAGGCGGGACTTGGAGCC TTGTTCGATGGCTTGGAACCACTCTGCTAATAATGTGGATGTGATTCAGGTCTCTTCTCCAGCAGCAAGTCCTAAGATGGATGGTGAAATGGAATGTTGT GATGTGGATTACAAGGCTGGGAGCAGTATAGTATCATGGATATCACGATAA
AA sequence Show only first row Show all	>Lus10003179 pacid=23144366 polypeptide=Lus10003179 locus=Lus10003179.g ID=Lus10003179.BGIv1.0 annot-version=v1.0 MGFGGAGYALSYPLVEALSSKLDDCIERYTDVFVSDALVQSCLADLGVAVTHQKGFHQFDLHGDISGIPSAHPQSPLVSLHHFDHIDPIFPSMDRPQAIQ HLMKAAEIDQSRISQQTICYQRQSNWSISVSWGYSAYIYENIIPRSSLIKPSRHLSRDMLQRRDLEPCSMAWNHSANNVDVIQVSSPAASPKMDGEMECC DVDYKAGSSIVSWISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	2.0	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	2.0	1.0000
					Lus10006079 [exp]	2.4	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	2.8	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	3.2	1.0000
AT3G48770			DNA binding;ATP binding (.1)		Lus10032551 [exp]	4.0	1.0000
AT2G23810		TET8	tetraspanin8 (.1)		Lus10027256 [exp]	4.6	1.0000
					Lus10016868 [exp]	4.9	1.0000
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10036824 [exp]	5.3	1.0000
AT1G68570			Major facilitator superfamily ...		Lus10038648 [exp]	5.5	1.0000

Compare expression of checked genes

Lus10003179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.