Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12470 456 / 3e-160 Protein of unknown function (DUF3411) (.1) AT2G40400 190 / 8e-54 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G56140 186 / 2e-52 Protein of unknown function (DUF399 and DUF3411) (.1) AT5G22790 121 / 2e-30 RER1 reticulata-related 1 (.1) AT2G37860 119 / 1e-29 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08640 97 / 3e-22 Protein of unknown function (DUF3411) (.1) AT5G24690 65 / 3e-11 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009956 [exp] 633 / 0 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 450 / 6e-158 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 448 / 7e-158 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 193 / 6e-55 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 192 / 2e-54 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 189 / 1e-53 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 116 / 3e-29 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 98 / 2e-22 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10024346 [exp] 96 / 2e-22 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256300 [exp] 493 / 1e-174 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 480 / 7e-170 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 457 / 4e-161 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.008G074300 [exp] 190 / 5e-54 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.016G103100 [exp] 124 / 2e-31 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.009G150400 [exp] 123 / 3e-31 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G140700 [exp] 99 / 5e-23 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.006G111300 [exp] 98 / 1e-22 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 61 / 5e-10 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 59 / 3e-09 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10003180 pacid=23144359 polypeptide=Lus10003180 locus=Lus10003180.g ID=Lus10003180.BGIv1.0 annot-version=v1.0 ATGGCAATGGCCGCCTGCTTCCTCGCAGCCGGTTCCCTCTGCGCCACCTCCTCCACCACCGTCAAGCTCAACCTTCCTCCCCTCACATCATCTTCTCCTT CCCCATTCCGCAGCCTCCGCCTCTCCTCCTCCACTTCCTCTGTTTCCATTCGCCGTATCAATCAACAACGCCTACTTCCTCTCTTCGTCCCTTCAGCCGC ATCCTACGGCGGCGGCGATGATGACGGCGGGATCAATCGCTTCGGCGGAGGCGGAGGAGATGATGACGAGGGGAAGGACGGAGATGAGAATGCAGGGGAT AAGAATCGAGAAGAGGCGATGTTAGTGTTGGCTCAAGTTGAGAGGTCGATCGACAGTTTGCCCAAGGACTTGGCGGCTGCGATCTTCGACGGGAGGATTC CTGGGGCGGTGGTTTCGAGGTTTTTGGAGCTGGAGAAGTCAGGGTTTATGCGGTGGCTGCTTCAGTTTGGCGGGTTTAAGGAGCGGTTGTTGGCTGATGA TCTTTTCTTGGCTAAAATCGGGATCGAATGCGGCGTCGGCCTCTTCACCAAGACTGCTGCGGAGTACGAGAAGCGCAAAGAGAATTTCTCAAAGGAGCTG GAATTTGTGTTCGCTGATGTGGTTATGGCCATATGTGCAGATTTCATGCTGGTGTTCCTTCCTGCGCCTACCGTGTCTCTCCGGCCAGCTCTTGCAGGAA CTGCTGGACCTATTGCTCGATTCTTCCATGGTTGCCCTGACAATGCTTTCCAGGTTGCTATTGCTGGAACTTCATATTCGTTCGTGCAGAGACTAGGCTC TATTCTGCGTAACGGGACGAAGCTCTTCGCTGTTGGCACTGCGTCGTCCCTGATTGGGACGTCGGTGATAAATGCGCTTATCAACGCAAAGAAAGCTGTG GATAACACTGGTGAAGTTGAAACTTTACCCATACTGTCCACCAGTGTTGGATATGGTGTCTACATGGCAGTTTCTAGCAATCTGAGGTACCAAATATTGG CTGGTGTTATTGAACAAAGGATCTTGGAGCCAGTCCTCCACCAACACAAGCTCATGCTCAGCGGACTCTGTTTTGCTGTCCGAACAGGCAACACATACTT GGGCTCACTGTTGTGGGTGGATTATGCTCGGATGGTGGGGCTTCAAAAATCTCCAGAAGAGCATAAGGAACTGGCTTAG
AA sequence Show only first row Show all	>Lus10003180 pacid=23144359 polypeptide=Lus10003180 locus=Lus10003180.g ID=Lus10003180.BGIv1.0 annot-version=v1.0 MAMAACFLAAGSLCATSSTTVKLNLPPLTSSSPSPFRSLRLSSSTSSVSIRRINQQRLLPLFVPSAASYGGGDDDGGINRFGGGGGDDDEGKDGDENAGD KNREEAMLVLAQVERSIDSLPKDLAAAIFDGRIPGAVVSRFLELEKSGFMRWLLQFGGFKERLLADDLFLAKIGIECGVGLFTKTAAEYEKRKENFSKEL EFVFADVVMAICADFMLVFLPAPTVSLRPALAGTAGPIARFFHGCPDNAFQVAIAGTSYSFVQRLGSILRNGTKLFAVGTASSLIGTSVINALINAKKAV DNTGEVETLPILSTSVGYGVYMAVSSNLRYQILAGVIEQRILEPVLHQHKLMLSGLCFAVRTGNTYLGSLLWVDYARMVGLQKSPEEHKELA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12470			Protein of unknown function (D...		Lus10003180 [exp]	0	1
AT5G59350			unknown protein		Lus10005456 [exp]	8.1	0.7990
AT3G45770			Polyketide synthase, enoylredu...		Lus10020160 [exp]	11.2	0.8475
AT5G59350			unknown protein		Lus10005455 [exp]	16.3	0.7511
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10010430 [exp]	17.6	0.8327
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	21.7	0.7848
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10017852 [exp]	37.5	0.8203
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	48.5	0.7952
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10027388 [exp]	51.0	0.8000
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	51.6	0.8008
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	53.7	0.7206

Compare expression of checked genes

Lus10003180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.