Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25220 360 / 3e-125 HD KNAT3 KNOTTED1-like homeobox gene 3 (.1.2) AT5G11060 352 / 2e-122 HD KNAT4 KNOTTED1-like homeobox gene 4 (.1) AT4G32040 312 / 1e-106 HD KNAT5 KNOTTED1-like homeobox gene 5 (.1) AT1G62990 283 / 8e-97 HD IXR11, KNAT7 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) AT1G70510 87 / 2e-20 HD ATK1, KNAT2 ARABIDOPSIS THALIANA KN 1, KNOTTED-like from Arabidopsis thaliana 2 (.1) AT1G23380 84 / 3e-19 HD KNAT6S, KNAT6L, KNAT6 KNOTTED1-like homeobox gene 6 (.1.2) AT4G08150 81 / 7e-18 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) AT1G62360 78 / 7e-17 HD WAM1, WAM, SHL, BUM1, STM WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) AT5G02030 60 / 2e-10 HD PNY, BLR, BLH9, RPL, HB-6, VAN, LSN VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) AT2G27990 58 / 8e-10 HD PNF, BLH8 POUND-FOOLISH, BEL1-like homeodomain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006291 [exp] 421 / 6e-149 AT5G25220 489 / 3e-172 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001934 [exp] 332 / 2e-114 AT5G25220 435 / 9e-152 KNOTTED1-like homeobox gene 3 (.1.2) Lus10001941 [exp] 330 / 6e-114 AT5G25220 439 / 2e-153 KNOTTED1-like homeobox gene 3 (.1.2) Lus10024485 [exp] 278 / 5e-95 AT1G62990 406 / 4e-144 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10017824 [exp] 211 / 1e-69 AT1G62990 269 / 9e-92 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Lus10030003 [exp] 83 / 2e-18 AT1G62360 315 / 5e-105 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Lus10028244 [exp] 82 / 2e-18 AT4G08150 370 / 1e-127 BREVIPEDICELLUS 1, BREVIPEDICELLUS, KNOTTED-like from Arabidopsis thaliana (.1) Lus10029125 [exp] 81 / 5e-18 AT1G23380 417 / 3e-147 KNOTTED1-like homeobox gene 6 (.1.2) Lus10013037 [exp] 81 / 6e-18 AT1G23380 417 / 4e-147 KNOTTED1-like homeobox gene 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G259400 [exp] 374 / 3e-130 AT5G25220 539 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G022700 [exp] 369 / 2e-128 AT5G25220 513 / 0.0 KNOTTED1-like homeobox gene 3 (.1.2) Potri.006G190000 [exp] 362 / 4e-127 AT5G25220 434 / 4e-152 KNOTTED1-like homeobox gene 3 (.1.2) Potri.018G114100 [exp] 359 / 6e-126 AT5G25220 441 / 6e-155 KNOTTED1-like homeobox gene 3 (.1.2) Potri.001G112200 [exp] 298 / 1e-102 AT1G62990 466 / 2e-167 KNOTTED-like homeobox of Arabidopsis thaliana 7 (.1) Potri.005G014200 [exp] 105 / 3e-27 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.013G008600 [exp] 103 / 2e-26 AT1G23380 250 / 1e-81 KNOTTED1-like homeobox gene 6 (.1.2) Potri.006G270401 [exp] 88 / 2e-20 AT1G62360 399 / 3e-138 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.011G011101 [exp] 88 / 2e-20 AT1G62360 400 / 7e-139 WALDMEISTER 1, WALDMEISTER, SHOOT MERISTEMLESS, SHOOTLESS, BUMBERSHOOT 1, BUMBERSHOOT, KNOX/ELK homeobox transcription factor (.1) Potri.010G043500 [exp] 82 / 1e-18 AT1G23380 371 / 3e-129 KNOTTED1-like homeobox gene 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03791 [flax] [poplar] KNOX2 KNOX2 domain CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF03789 [flax] [poplar] ELK ELK domain
Representative CDS sequence Show only first row Show all	>Lus10003183 pacid=23144367 polypeptide=Lus10003183 locus=Lus10003183.g ID=Lus10003183.BGIv1.0 annot-version=v1.0 ATGGCGAAGTACTCAGTCGTGGGCAACGGTCCCGTGGTGGACGAGAAAGAGCTCGATCAGTTCATGACACATTATGTTCTGTTACTCTGTTCATTCAAAG ACCAACTGCAACAGCATGTTCGAGTTCATGCTATGGAGGCGGTCATGGCTTGCTGGGAGCTCGAGCAAGCGCTTCAGAGCCTCACTGGTGTATCTCCCGG AGAGGGCACAGGTGCAACGATGTCTGATGACGATGATGACCAAGTTGATAGTGATACCAACTTGTACAACGCAAGTATGGATGCCATGGATACAATGGGA TTCGGTCCCTTAGTCCCTACTGAAACTGAGAGGTCACTTATGGAGCGTGTAAGGCTAGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGCTAG TGGACATCAGAGAGGAGATCCTCCGCAAGAGAAGAGCAGGAAAACTGCCTGGCGATACAACATCCGTTTTGAAATCTTGGTGGCAATCACATTCCAAATG GCCATATCCAACTGAGGAAGACAAAGCAAGACTTGTTCAGGAGACAGGACTGCAGTTGAAGCAGATAAACAACTGGTTCATTAACCAGAGAAAGAGGAAC TGGCACAGCAATCCTTCAGGATCTACTGTGAAGAGCAAAAGAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10003183 pacid=23144367 polypeptide=Lus10003183 locus=Lus10003183.g ID=Lus10003183.BGIv1.0 annot-version=v1.0 MAKYSVVGNGPVVDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWELEQALQSLTGVSPGEGTGATMSDDDDDQVDSDTNLYNASMDAMDTMG FGPLVPTETERSLMERVRLELKHELKQGYKEKLVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN WHSNPSGSTVKSKRKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	0	1
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	1.0	0.9572
AT5G37480			unknown protein		Lus10013637 [exp]	2.0	0.9330
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	2.4	0.9362
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000818 [exp]	2.4	0.9373
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023829 [exp]	2.8	0.9285
AT5G54850			unknown protein		Lus10011150 [exp]	4.5	0.9325
AT2G20030			RING/U-box superfamily protein...		Lus10012975 [exp]	8.4	0.9214
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	8.5	0.9076
AT3G21690			MATE efflux family protein (.1...		Lus10001142 [exp]	9.5	0.8948
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	11.0	0.9203

Compare expression of checked genes

Lus10003183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.