Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46920 92 / 1e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 81 / 1e-16 PB1 domain-containing protein tyrosine kinase (.1) AT3G24715 76 / 3e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 76 / 4e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 76 / 7e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G79570 76 / 7e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G16270 76 / 7e-15 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT5G25240 60 / 4e-11 unknown protein AT5G14890 54 / 6e-08 NHL domain-containing protein (.1) AT5G62865 50 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006290 [exp] 174 / 1e-54 AT5G25240 67 / 5e-15 unknown protein Lus10019577 [exp] 112 / 2e-27 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10040006 [exp] 112 / 3e-27 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001942 [exp] 76 / 2e-16 AT5G14890 79 / 1e-17 NHL domain-containing protein (.1) Lus10001932 [exp] 75 / 6e-16 AT5G14890 76 / 1e-17 NHL domain-containing protein (.1) Lus10001933 [exp] 75 / 7e-16 AT5G14890 78 / 4e-17 NHL domain-containing protein (.1) Lus10025941 [exp] 77 / 2e-15 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 77 / 3e-15 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10006977 [exp] 77 / 3e-15 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190200 [exp] 103 / 3e-24 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 102 / 7e-24 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G052000 [exp] 82 / 5e-17 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.003G176100 [exp] 80 / 3e-16 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.018G114200 [exp] 73 / 2e-15 AT5G62865 57 / 1e-10 unknown protein Potri.006G170700 [exp] 77 / 3e-15 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 77 / 3e-15 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 75 / 1e-14 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.005G095200 [exp] 73 / 3e-14 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 73 / 4e-14 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10003184 pacid=23144363 polypeptide=Lus10003184 locus=Lus10003184.g ID=Lus10003184.BGIv1.0 annot-version=v1.0 ATGCCCGTGACGAGATCCCTCACAAACGCTCTTCATAACAAGGATCTGAAGAAACAGCAAGAGAAGGTGAACATGGGAGTTCCGATGTCAGAAGGTGCAG GACGCCTACAGGTTGGAAGATTCAGCTATGTATTAGTCTATGAGATGGATGATTTCTGGAATGAAGCCATCACGCTTGCAGACTTGCACTATCCAAATGT GGTATCTTTCTACGGTGTTGTTCTCGATGGCCCTGGAAGTTCAGTAGCGACTGTGACAGAATATATGATCAATGGCTCGTTGCGGAATGCTTTGCGCGGT ATAGTCAGCAATACTCTGAGGCCACCTGTGCCGGAGATCTGTGACTTGGAATGGAAGTCATTGATGGAGAGGTGTTGGTCATCAGAGCCGTCGCAGAGAC CAAGCTTCATAGGAATCGCAAATGACTTGCGAGCAATGGCAGCCAAGATACCTTGGAGGGGACAAACTCCAACTCAACAACAACCATCTTCAGCAGCACA ACCACAGGAGCAGTTCTGTAATGAAGAAGAAGGTACATCATCATCAGGATCTTCATCATCAACCTTCTCAGGCTGCAACTGTTTCGGCTCCTTTTTCTCG AAATGGAGAAACAACGACAGCAGCAACAGCTACCTTCTTACGCAGCAGAAAACAGAGTCCTCGTCGTTGTCGTCGTCGTGGGTGATGGAGAAGCTGAAGA AAGTGAAGGAGTTGTCCGAGATGGTTGCAGGGCCCAAATGGAAGAATTTCATAAGGAGGAAGAAGCATAGGAAGAATTATAACAAGGGATTCTACTACAA CGCCGAGAGCTACGCCCTTAATTTCGACTGTGGTGAAGAGGACGACGATAATGAACATGACGATGTTCGTGGGTTTTCTTCCAGATTCGCTGCTGTTCCT CCTCATGTTGTTGTGCCTACTAGATAG
AA sequence Show only first row Show all	>Lus10003184 pacid=23144363 polypeptide=Lus10003184 locus=Lus10003184.g ID=Lus10003184.BGIv1.0 annot-version=v1.0 MPVTRSLTNALHNKDLKKQQEKVNMGVPMSEGAGRLQVGRFSYVLVYEMDDFWNEAITLADLHYPNVVSFYGVVLDGPGSSVATVTEYMINGSLRNALRG IVSNTLRPPVPEICDLEWKSLMERCWSSEPSQRPSFIGIANDLRAMAAKIPWRGQTPTQQQPSSAAQPQEQFCNEEEGTSSSGSSSSTFSGCNCFGSFFS KWRNNDSSNSYLLTQQKTESSSLSSSWVMEKLKKVKELSEMVAGPKWKNFIRRKKHRKNYNKGFYYNAESYALNFDCGEEDDDNEHDDVRGFSSRFAAVP PHVVVPTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	0	1
AT5G49190		ATSUS2, SSA, SU...	SUCROSE SYNTHASE FROM ARABIDOP...		Lus10010308 [exp]	9.2	0.8794
AT4G04960			Concanavalin A-like lectin pro...		Lus10018602 [exp]	12.4	0.8949
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Lus10042243 [exp]	15.2	0.8685
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	17.1	0.9012
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	17.8	0.8762
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	18.2	0.9004
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008537 [exp]	20.7	0.8651
AT2G41410			Calcium-binding EF-hand family...		Lus10038970 [exp]	21.4	0.8544
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10000800 [exp]	28.9	0.8412
AT5G25930			Protein kinase family protein ...		Lus10006028 [exp]	29.7	0.8449

Compare expression of checked genes

Lus10003184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.