Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51405 210 / 4e-63 myosin-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009954 [exp] 558 / 0 AT1G51405 289 / 2e-92 myosin-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256700 [exp] 294 / 8e-95 AT1G51405 327 / 8e-107 myosin-related (.1) Potri.009G052400 [exp] 285 / 1e-91 AT1G51405 294 / 9e-94 myosin-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003186 pacid=23144361 polypeptide=Lus10003186 locus=Lus10003186.g ID=Lus10003186.BGIv1.0 annot-version=v1.0 ATGGAGAAATCATCTACAGTAACGCCATTGACAACGAGGAGGCCGAAATGGAAGTACCCACAACCGCAACAGACTCCGCGAATCCTCCACTTGCCACGCA GGCATCGCCGGAAGAACCTTCCGCCGCCACCTCCGCCGCCGCCCTCGGTTGACAGGAGAGGTAGGCTGGATTGCCTGTTTGACCAGGAGAGGGAGTTTAA AAAAGGAGGAGCTATCCCGATCGTGACGGTGAGCCGCGGAATTGAATTGGAGAGGAGGAGAGAAAGAGTCCAGGAGAGAGAAAGTTCGTCGGCGGCTGTG GTGGAAGAGGAGAAGTGGCGGTTTCAAGCTGAGATGTTGAGAGCGGAGTGTAATTTGCTGAGGATGGAAAAAGAGATTGGCTTGAATAAGATTGAGAGGA GGAAAGCTCATATGGAGCGGACTCTGCAATCTGCTCTTCACACTCTGCTTTCCGGTAGGGAAAGGATATGCAATGGGGAGGATGGGAGGGTGGAATTGGG GGAAGAGATTGGGAGATTGGTTGTGAAGCTTGAGATATTGCAGAGGAGATTATCATCAAGGACGAGAAGAGATTGTAGTGTTAAAAAAATTCAGGAGATG GCTGAGGAAAGCTTGTGTATCAGAAAAGATGATGGGAATGGCGTCTCATCACAGACCAACAACTTCAATGTTGTGCAGATAGAGATACTGAGGAGGAAGA TGGAAGGATTATCGAGAGGAAGATTGTTGGAGAGGATGGAGGATGAATATGGATCAATGCTTTCAACGGCTAATAGCTCTGCACCTAGCTCTGCCTCTAA TTCCAGGAGATTTGAACTCCCTCCTCCTCCTGAAAAGAATATGGCTTCTGTTAGAAAACAGCAACCTTTCAAGGAGAATAAGAAGAGCAAGGAAGAACAG CAACAGAAAGAGTGTGGAGGAAGCTGTAAGGCAATAGTAAGGAGAGTGATGGAGCAAGTTAGAGCAGAGACAGAACAATGGTCACAAATGCAAGCAATGT TGGGGCAAGTTAGAGATGAGATGGAACAGCTTCAAGCTTCCAGACAGTTTTGGGAAGATAAATCACTTGATTCCGATTCTAAACTCCAGAATCTACATTC TACTGTGGAGGAATGGAGACAGAAAGCAATTTCTTTCGAGGAGAAAGCAAAGGAGCTTGAAAAGGAGATTCATGGGCTGAAGAAGTTGAAATCTAAAGAT AGATCCACCAATTTGAGAGACAATGCTTGCTTGCTGTAG
AA sequence Show only first row Show all	>Lus10003186 pacid=23144361 polypeptide=Lus10003186 locus=Lus10003186.g ID=Lus10003186.BGIv1.0 annot-version=v1.0 MEKSSTVTPLTTRRPKWKYPQPQQTPRILHLPRRHRRKNLPPPPPPPPSVDRRGRLDCLFDQEREFKKGGAIPIVTVSRGIELERRRERVQERESSSAAV VEEEKWRFQAEMLRAECNLLRMEKEIGLNKIERRKAHMERTLQSALHTLLSGRERICNGEDGRVELGEEIGRLVVKLEILQRRLSSRTRRDCSVKKIQEM AEESLCIRKDDGNGVSSQTNNFNVVQIEILRRKMEGLSRGRLLERMEDEYGSMLSTANSSAPSSASNSRRFELPPPPEKNMASVRKQQPFKENKKSKEEQ QQKECGGSCKAIVRRVMEQVRAETEQWSQMQAMLGQVRDEMEQLQASRQFWEDKSLDSDSKLQNLHSTVEEWRQKAISFEEKAKELEKEIHGLKKLKSKD RSTNLRDNACLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51405			myosin-related (.1)		Lus10003186 [exp]	0	1
					Lus10010925 [exp]	5.7	0.8433
					Lus10002317 [exp]	7.0	0.8895
AT4G23020			unknown protein		Lus10006336 [exp]	8.0	0.8219
					Lus10038295 [exp]	11.7	0.8784
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	14.0	0.8156
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10015734 [exp]	14.6	0.8766
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10000592 [exp]	15.0	0.8752
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10008589 [exp]	16.6	0.7731
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	18.6	0.8741
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10000208 [exp]	19.3	0.8728

Compare expression of checked genes

Lus10003186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.