Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45860 46 / 1e-06 RCAR5, PYL11 regulatory components of ABA receptor 5, PYR1-like 11 (.1) AT1G24020 43 / 1e-05 MLP423 MLP-like protein 423 (.1.2) AT2G38310 43 / 3e-05 RCAR10, PYL4 regulatory components of ABA receptor 10, PYR1-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016840 [exp] 100 / 3e-27 AT1G24020 58 / 5e-11 MLP-like protein 423 (.1.2) Lus10037715 [exp] 100 / 7e-27 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Lus10016839 [exp] 77 / 3e-18 ND / Lus10015339 [exp] 71 / 1e-15 ND 41 / 6e-05 Lus10014508 [exp] 69 / 5e-15 ND / Lus10039454 [exp] 66 / 7e-14 AT1G24020 43 / 1e-05 MLP-like protein 423 (.1.2) Lus10032178 [exp] 62 / 1e-12 ND / Lus10005608 [exp] 56 / 4e-10 ND / Lus10037393 [exp] 42 / 3e-05 AT2G26040 39 / 5e-04 regulatory components of ABA receptor 14, PYR1-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G000600 [exp] 145 / 4e-45 AT1G24020 67 / 1e-14 MLP-like protein 423 (.1.2) Potri.008G212100 [exp] 136 / 2e-41 AT1G24020 50 / 6e-08 MLP-like protein 423 (.1.2) Potri.008G213669 [exp] 129 / 1e-38 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G213446 [exp] 129 / 1e-38 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G212700 [exp] 129 / 1e-38 AT1G24020 68 / 8e-15 MLP-like protein 423 (.1.2) Potri.008G212500 [exp] 122 / 4e-36 AT1G24020 52 / 6e-09 MLP-like protein 423 (.1.2) Potri.008G212400 [exp] 120 / 2e-35 ND / Potri.011G026100 [exp] 118 / 1e-34 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2) Potri.004G021100 [exp] 118 / 2e-34 AT1G24020 53 / 4e-09 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 117 / 3e-34 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10003187 pacid=23144362 polypeptide=Lus10003187 locus=Lus10003187.g ID=Lus10003187.BGIv1.0 annot-version=v1.0 ATGGCAATCTTTAGTTTTGAAGCAGAGGTCACCACCTCCATCGAGCCTGCTAAGATATTCAAGGCCTTTGTGCTCGACGGCGAGAAGATCGCCTCCCAGA TCTTCCCGGAGGCCATCAAGAGTGTCTCTTCTGAAGGTGACGGCGGCCCTGGAACAATCAAACAAGTCCACTTCAATGAAGGGAGCCCGTTCAAGTATGT GAAGGAAGTAGTTGATGAACTAGACAAGGAGAAATTGGTGTACGGGTACACGGTGATCGGAGGAGATGCATTGATGAGCGGAGTGGAGAAGATCTCTTAC AGGATCACCATGGAGGAATCTGCGGAGGGAGGAACCAAATGTAAGCGCACTAGCAAATTCTTTACTGCTGAAAATGGAGGAATTCGAGAAGAAGAAATCA AGGCTGCTCAGGATGGAATCTGGCTAATGTTTGTTGGTATATTCAAGGCCTTTGAGAGTCACCTATTGGCAAATCCTGCATCTTAA
AA sequence Show only first row Show all	>Lus10003187 pacid=23144362 polypeptide=Lus10003187 locus=Lus10003187.g ID=Lus10003187.BGIv1.0 annot-version=v1.0 MAIFSFEAEVTTSIEPAKIFKAFVLDGEKIASQIFPEAIKSVSSEGDGGPGTIKQVHFNEGSPFKYVKEVVDELDKEKLVYGYTVIGGDALMSGVEKISY RITMEESAEGGTKCKRTSKFFTAENGGIREEEIKAAQDGIWLMFVGIFKAFESHLLANPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	0	1
					Lus10015339 [exp]	1.0	0.9898
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	1.7	0.9853
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	2.0	0.9870
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	4.0	0.9822
AT5G01750			Protein of unknown function (D...		Lus10025253 [exp]	4.5	0.9819
AT1G13340			Regulator of Vps4 activity in ...		Lus10033552 [exp]	4.9	0.9849
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	5.0	0.9850
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10005399 [exp]	5.1	0.9803
AT2G18210			unknown protein		Lus10028324 [exp]	6.5	0.9787
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	7.5	0.9846

Compare expression of checked genes

Lus10003187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.