Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10955 443 / 1e-156 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G05260 397 / 2e-138 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24230 335 / 7e-114 Lipase class 3-related protein (.1) AT5G24180 265 / 3e-86 Lipase class 3-related protein (.1) AT5G24220 264 / 6e-86 Lipase class 3-related protein (.1) AT5G24200 224 / 7e-71 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 176 / 3e-52 alpha/beta-Hydrolases superfamily protein (.1) AT5G50890 154 / 2e-43 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 142 / 2e-40 Lipase class 3-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001819 [exp] 666 / 0 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 576 / 0 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018097 [exp] 359 / 2e-123 AT5G24230 357 / 2e-122 Lipase class 3-related protein (.1) Lus10022416 [exp] 266 / 2e-88 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10031455 [exp] 160 / 9e-46 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 154 / 2e-43 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 149 / 2e-41 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 144 / 4e-39 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090500 [exp] 524 / 0 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G141100 [exp] 510 / 0 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G204100 [exp] 162 / 1e-46 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 160 / 1e-45 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10003188 pacid=23155755 polypeptide=Lus10003188 locus=Lus10003188.g ID=Lus10003188.BGIv1.0 annot-version=v1.0 ATGGAATCCGAGAGGGAAGATCTTAACCTCTCAGGACCGTTGCACTTAACTTTTGTTGATTGGTCTGATGCGAATCACAGAAGATCCGTCGCTGCTAGCT TAGTTCAGAGCGTTTACATCCTAGAGCGCGACCGCCAGCTTAACCGCGAGCATCCGAAAGCTCTAGCTCCACCATGGTGGGAGTTTTTCCATTTCAAGCT GCTCCGTAACCTAGTAGACGATGTGGATTTCTGCATCTTTGGTGCCGTGTTTGAATACAAACCTCCAACACCTCACAGTAATCATCACTCCTTGGATGCA AGCCCCCGGTACGTGATTGCCTTCCGTGGAACCTTGACCAAGCCAGGTTCATTTGCACGGGACATCGAGCTGGATCTCCATGTTATTAGAAATGGACTCC ATGAGACGTCTCGTTTTGAGATTGCAATGCAGGCAGTTCGAAACATGGTTGCTTCCGTAGGTGATTCGAATGTCTGGTTAGCCGGACACTCTCTCGGAGC AGCCATGGCAATGCTTGCTGGAAAGACCATGGCGAAATTGAACAACAATTTCCTCCAAGCGTTCCTTTTCAACTCGCCGTTTTTGTCAGCGCCAATCGAG AGGATCAAGGACAAGCGAGTCAAACACGGGATCAGGATAGCTGGGAGTGTGATTACAGCAGGACTCGCATTCGCTTCGAAGATAAAAAATAACAACAATC AAAATCACGGGAGCCGGTCTGCGGATCCATTCGTGGCTCTCTCATCCTGGATCCCGTGCCTGTTTGTGAACCCCGGAGATCCAATCTGCTCGGAGTATGT TGGATACTTCGAGCACAGGAAGAAGATGGACGAGATAGGAATCGGAGCCATTGAGAAGTTGGCGACTCAGAACTCGCTGGGAGGTCTTCTGATGGGAAGG GATTCGGAGCCTCTCCACCTTATTCCGTCCGCTATTCTAGCAGTCAATTCGAGGCCTTCGCAGGATTTGAAGGAAGCTCATGGGATTCATCAGTGGTGGA GGCCTGATTTGCAGCTGCAGTCTCAGCTCTACAAGTACAACTAG
AA sequence Show only first row Show all	>Lus10003188 pacid=23155755 polypeptide=Lus10003188 locus=Lus10003188.g ID=Lus10003188.BGIv1.0 annot-version=v1.0 MESEREDLNLSGPLHLTFVDWSDANHRRSVAASLVQSVYILERDRQLNREHPKALAPPWWEFFHFKLLRNLVDDVDFCIFGAVFEYKPPTPHSNHHSLDA SPRYVIAFRGTLTKPGSFARDIELDLHVIRNGLHETSRFEIAMQAVRNMVASVGDSNVWLAGHSLGAAMAMLAGKTMAKLNNNFLQAFLFNSPFLSAPIE RIKDKRVKHGIRIAGSVITAGLAFASKIKNNNNQNHGSRSADPFVALSSWIPCLFVNPGDPICSEYVGYFEHRKKMDEIGIGAIEKLATQNSLGGLLMGR DSEPLHLIPSAILAVNSRPSQDLKEAHGIHQWWRPDLQLQSQLYKYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10003188 [exp]	0	1
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	1.7	0.9380
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	3.9	0.9426
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	4.6	0.9207
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	6.3	0.9386
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	6.9	0.9185
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	8.7	0.9242
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10023348 [exp]	8.7	0.9260
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	10.7	0.9087
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	13.9	0.8688
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10013604 [exp]	15.3	0.9182

Compare expression of checked genes

Lus10003188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.