Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64450 150 / 3e-43 Glycine-rich protein family (.1) AT4G23930 126 / 1e-35 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001818 [exp] 155 / 8e-47 AT1G64450 86 / 4e-20 Glycine-rich protein family (.1) Lus10023071 [exp] 154 / 5e-46 AT1G64450 191 / 3e-62 Glycine-rich protein family (.1) Lus10032397 [exp] 77 / 1e-17 AT4G23930 85 / 2e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10040941 [exp] 45 / 2e-05 AT3G54200 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018185 [exp] 45 / 2e-05 AT3G54200 153 / 9e-47 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 45 / 2e-05 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 44 / 4e-05 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10025649 [exp] 44 / 5e-05 AT3G54200 152 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 43 / 0.0002 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141200 [exp] 181 / 3e-56 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G090400 [exp] 175 / 3e-54 AT4G23930 166 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.006G112800 [exp] 50 / 3e-07 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10003189 pacid=23155752 polypeptide=Lus10003189 locus=Lus10003189.g ID=Lus10003189.BGIv1.0 annot-version=v1.0 ATGACCAAACCACCGCATCATCAACACCAACACCACCGCCGTCCTCCCAAATCAGGCCGTACAAATCTAGCGTCATGCATAGTGGCAACAATCTTCCTAA TCTTCCTACTCATCGTCATCCTAATCGTCTTCTTTACCGTCTTCAAACCAAAAGACGTCAAGATCTCCGTCAACGCCGTCCAGCTCCCGTCCTTCTCCGT CTCCAACAACACCGTCAAATTCACCTTCTCCCAGTACGTCTCCCTCCGCAACCCCAACCGCGCTTCCTTCTCCCACTACGACAGCACCCTCCAGCTCGTC TACTCCGGCAACCAGGTTGGATTCATGTTCATCCCCGCCGGTCAAATCGACGCCGGCCAGACCAAGTACATGGCCGCTAGCTTCTCCGTCCAGTCCTTCC CTCTCTTCCTCAATCCCCAGGCCGCCGTCAATGTTGGCCCCGCCGTCACTTTCGGCCCCGGCGGATTAGTCCCCGCCGCCGGAAGAAACGGTGTCCAACC CGGGTTCGGGTCGGATGTCGTAAAGTCCGCCGAAGAAACGGGCGTCGTGCCCGGGTCCGGGTCGGCAGGTTTAATGCCTAGCGGAAACGGTGTCGTTCCG GGGTTTGGTTCGGCAGCAGGAGTAATTCCTGGCGGAAACGGTGGCGTTCCGGGTGGAGTAATTCCTGGCGGGAACGGTGTGGTTCCCGGGTTCGGGGCGG CAGGAGGAGGGGTGATTCATCCGCCTGGTGGTGGGCGGGTCGGGCCGACGATGGAGATAGAGTCGAGGATCCGGATGGTGGGACGTGTTCGGGTACTGGA TTTTTTCACGCACCACGTGGAGGCGAAGAGCGGGTGCCGGGTAGCGATTGCGGTTACAGATGGATCGGTGCTTGGATTTCATTGCTAG
AA sequence Show only first row Show all	>Lus10003189 pacid=23155752 polypeptide=Lus10003189 locus=Lus10003189.g ID=Lus10003189.BGIv1.0 annot-version=v1.0 MTKPPHHQHQHHRRPPKSGRTNLASCIVATIFLIFLLIVILIVFFTVFKPKDVKISVNAVQLPSFSVSNNTVKFTFSQYVSLRNPNRASFSHYDSTLQLV YSGNQVGFMFIPAGQIDAGQTKYMAASFSVQSFPLFLNPQAAVNVGPAVTFGPGGLVPAAGRNGVQPGFGSDVVKSAEETGVVPGSGSAGLMPSGNGVVP GFGSAAGVIPGGNGGVPGGVIPGGNGVVPGFGAAGGGVIHPPGGGRVGPTMEIESRIRMVGRVRVLDFFTHHVEAKSGCRVAIAVTDGSVLGFHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	0	1
AT5G25280			serine-rich protein-related (....		Lus10038100 [exp]	1.4	0.9144
AT3G54390	Trihelix		sequence-specific DNA binding ...		Lus10024143 [exp]	3.7	0.9019
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Lus10023228 [exp]	4.2	0.8693
AT4G03600			unknown protein		Lus10018599 [exp]	4.2	0.8727
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	4.5	0.8747
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Lus10007492 [exp]	5.2	0.8858
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	5.8	0.8518
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	7.2	0.8577
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	8.0	0.8547
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	8.4	0.8712

Compare expression of checked genes

Lus10003189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.