Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46500 583 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 576 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT1G64460 443 / 9e-155 Protein kinase superfamily protein (.1) AT2G03890 215 / 2e-62 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 212 / 3e-61 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 203 / 9e-59 Protein kinase superfamily protein (.1.2) AT1G26270 205 / 1e-58 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G40850 200 / 3e-57 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT1G64470 107 / 8e-27 Ubiquitin-like superfamily protein (.1) AT1G27570 107 / 2e-24 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001817 [exp] 986 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10022411 [exp] 614 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 578 / 0 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10030251 [exp] 461 / 2e-161 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 459 / 1e-160 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10036834 [exp] 217 / 7e-63 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10019197 [exp] 217 / 8e-63 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 196 / 2e-55 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090300 [exp] 725 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.012G014600 [exp] 639 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 639 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.015G013600 [exp] 607 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.010G137400 [exp] 213 / 2e-61 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 209 / 1e-60 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.008G112200 [exp] 209 / 6e-60 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 201 / 2e-57 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.002G171400 [exp] 86 / 2e-20 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10003190 pacid=23155760 polypeptide=Lus10003190 locus=Lus10003190.g ID=Lus10003190.BGIv1.0 annot-version=v1.0 ATGCTGGTTCTGGAGTCGGATTCAATAGCGTCGGTAAAGCTCCGAATCCAAACCTGCAAAGGATTCGTCGTCAAGAAGCAAAAGCTCGTCTTCAAGGGGA GAGAGCTCTTCCGCAGCAAAGATCTCGTCAAAGACTACGGAATCACCACTGGTAACGTCCTCCAGCTGAGGATTTCCAGAGAAGGTAAAAAAGGCTGGTT TGTGGAGGATGTTGACCAGCAGGAGATCTTCCACAACGGTCAACGGCTCGATGACCAAAGGCTGATTCACGAAATATGCAATGATCGTGATGTTCATGTT GCTAATACTAATACTAATGCAGCAATCCATTTGCTGGTTCAGAAGACTGCCAAGGTGAGAGCTAAGCCTCTGGATAAGGATTTCGAGATCGAGGTCGAGG CAGCTGATAGAAATCAAAATCAGAATCAGAATCAGAACAATCAAGATGATGAGCAGTCGATTCAGGTTCTGAGCAAAGAGCAAGTCGGGAGAGATTTCTG GCTGGAGCCAATGATTCTGAATCCAAGTGTTAGACTGGATTCATTAATTTGGGAAGTGGTGAACTCGACTTTTGTCGGGTTGGAAATGGGGCACCCTCCG ATCCGTTCGTCAGAAGGGACCGGAGGGACCTATTTCATGAGGAATCCTTCAGGAGAAGGATTCGTTTCGGTGTTCAAGCCGAGTGACGAGGAGCCTAATG CAGTGAACAACCCTCAAGGATTGGCAATGTCTTCGAATGGTGAAGGTTTGAAGAGAGGAACTAAAGTAGGGGAAGGAGCAGTGAGGGAAGTTGCAGCTTA TATATTGGATCATCCCAAGAGTGGTCCAAGGGCGTTGACCAACGAGGTTATGGGGTTTTCTGGCGTGCCCCCGACGATCATTGCTCAGTGTTTGCACAAA GGGTTTAATCATCCGAAAGGGTACGAGTATTCGGCCAGGAGTGTAAAGATTGGATCTTTGCAGATGTTCATGAATAATGAAGGGAGCTGTGAGGATTTAG GTCCTGCAGGGTTCCCTGTGGAGGAAGTGCATAAGATCACCGTGCTTGATGTTAGAATGGCGAATGCTGATCGACATGCTGGCAATATCTTGATCGGGAA AGGAGAGGATGGTCAGAGTGTGTTGATACCTATTGATCATGGCTATTGCTTGCCGGAGACGTTTGAAGACTGCACATTCGATTGGGTCTACTGGCCACAA GCGCGGCAACCATACTCTCCAAAGGCGATCGACTACATAAACTCATTAGATGCCGAATACGACATAGCACTGCTGGAATTCCACGGCTGGAACATCCCTC CACAATGTGCTCGCACGCTTCGAATCTCGACCATGCTTCTGAAGAAAGGAGTGGAGAAAGGTCTCACTCCTTTCGACATCGGGAGCATCATGTGCAGAGA AACGGTACACAAGGAGTCGGTCATCGAGGAGATCCTTAACGAAGCGCAGGACTGCTTGATACCGGGCATGAGTGAAGCTGCATTCCTTGATACAGTATCC GAAATCATGGACGCCCGCCTTAACGAGCTCAGTACCAAATAA
AA sequence Show only first row Show all	>Lus10003190 pacid=23155760 polypeptide=Lus10003190 locus=Lus10003190.g ID=Lus10003190.BGIv1.0 annot-version=v1.0 MLVLESDSIASVKLRIQTCKGFVVKKQKLVFKGRELFRSKDLVKDYGITTGNVLQLRISREGKKGWFVEDVDQQEIFHNGQRLDDQRLIHEICNDRDVHV ANTNTNAAIHLLVQKTAKVRAKPLDKDFEIEVEAADRNQNQNQNQNNQDDEQSIQVLSKEQVGRDFWLEPMILNPSVRLDSLIWEVVNSTFVGLEMGHPP IRSSEGTGGTYFMRNPSGEGFVSVFKPSDEEPNAVNNPQGLAMSSNGEGLKRGTKVGEGAVREVAAYILDHPKSGPRALTNEVMGFSGVPPTIIAQCLHK GFNHPKGYEYSARSVKIGSLQMFMNNEGSCEDLGPAGFPVEEVHKITVLDVRMANADRHAGNILIGKGEDGQSVLIPIDHGYCLPETFEDCTFDWVYWPQ ARQPYSPKAIDYINSLDAEYDIALLEFHGWNIPPQCARTLRISTMLLKKGVEKGLTPFDIGSIMCRETVHKESVIEEILNEAQDCLIPGMSEAAFLDTVS EIMDARLNELSTK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10003190 [exp]	0	1
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	3.2	0.9005
AT1G74160			unknown protein		Lus10017857 [exp]	3.5	0.8762
AT2G33700			Protein phosphatase 2C family ...		Lus10012244 [exp]	3.9	0.8677
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	4.9	0.8663
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10007386 [exp]	5.5	0.8876
AT1G63300			Myosin heavy chain-related pro...		Lus10014980 [exp]	6.0	0.8567
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	7.7	0.8399
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	8.5	0.8730
AT5G13100			unknown protein		Lus10015761 [exp]	10.0	0.8218
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	12.4	0.8363

Compare expression of checked genes

Lus10003190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.