Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64480 265 / 2e-90 CBL8 calcineurin B-like protein 8 (.1) AT4G26570 250 / 1e-84 ATCBL3 calcineurin B-like 3 (.1.2) AT5G24270 246 / 3e-83 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT5G55990 243 / 6e-82 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT4G33000 243 / 2e-81 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G17615 237 / 2e-79 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 232 / 1e-77 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G16350 202 / 1e-65 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 200 / 3e-65 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 191 / 2e-61 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001816 [exp] 419 / 2e-151 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10023069 [exp] 353 / 1e-125 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 351 / 5e-122 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10022407 [exp] 276 / 5e-95 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10018108 [exp] 268 / 1e-91 AT5G24270 328 / 1e-115 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 248 / 5e-84 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 239 / 2e-80 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10015630 [exp] 236 / 1e-78 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 230 / 2e-76 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090200 [exp] 282 / 2e-97 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.012G015100 [exp] 279 / 2e-96 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 276 / 3e-95 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 252 / 1e-85 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G371700 [exp] 252 / 2e-85 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.016G003500 [exp] 249 / 2e-84 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 249 / 4e-84 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 247 / 2e-83 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.003G037800 [exp] 246 / 1e-82 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.003G084200 [exp] 239 / 1e-80 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003191 pacid=23155756 polypeptide=Lus10003191 locus=Lus10003191.g ID=Lus10003191.BGIv1.0 annot-version=v1.0 ATGCTCGCATTTCGCCACTGTTTCTTCAAGCAGAAGATCAAGAAGCAGACGCGGTATGAAGCCCACGCTCTTCTTGCTTCAGAGACACCATTTTCAATTA ATGAAATAGAGGCTCTGTACAACCTATTCAAGAAGCTAAGTAGCACTGTAAACGATGATGACTTGATTCGCAAGGAAGATTTCCTATTCGCATTGTTCAG AAGCACAAAGGCTAACAACCTTTTTGCAGAGAGGGTATTTGCACTGTTTGATACGAAGCACAATGGAGTGATAGAGTTTAGCGAATTCGTTCATTCGTTA AGCATCTTCCATCCTCGAGCACCTATAGCTGACAAAATCTCATTTGAATTTCGGCTGTATGATCTGCACGAAACCGGGTTCATAGAACGCGATGAGGTGA AGGAGATGGTGTTGGCTATCCTGAGAGAATCTGACCTGACACTTTCTGAAGAGTACATCGAGTCCATGGTTGATAAGACACTTGCAGAGGCAGATTTGAA TGGAGATGGGAAGATTGATGAACAAGAATGGAATGAACTGGTGGCAAAGCATCCATCTTTGATAAAAAATATGACTATTCCGTACCTAAGGGACTTGACT GTTACATTTCCAAGCTTTGTCCTGAACACTGAAGTTCCAGATTGA
AA sequence Show only first row Show all	>Lus10003191 pacid=23155756 polypeptide=Lus10003191 locus=Lus10003191.g ID=Lus10003191.BGIv1.0 annot-version=v1.0 MLAFRHCFFKQKIKKQTRYEAHALLASETPFSINEIEALYNLFKKLSSTVNDDDLIRKEDFLFALFRSTKANNLFAERVFALFDTKHNGVIEFSEFVHSL SIFHPRAPIADKISFEFRLYDLHETGFIERDEVKEMVLAILRESDLTLSEEYIESMVDKTLAEADLNGDGKIDEQEWNELVAKHPSLIKNMTIPYLRDLT VTFPSFVLNTEVPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10003191 [exp]	0	1
AT3G24750			unknown protein		Lus10038162 [exp]	10.1	0.9167
AT4G35200			Arabidopsis protein of unknown...		Lus10023958 [exp]	13.2	0.8948
AT4G35200			Arabidopsis protein of unknown...		Lus10022635 [exp]	13.7	0.8923
AT2G17080			Arabidopsis protein of unknown...		Lus10014450 [exp]	14.3	0.9085
AT1G06930			unknown protein		Lus10024185 [exp]	14.4	0.9162
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	18.4	0.9098
AT1G23410			Ribosomal protein S27a / Ubiqu...		Lus10013082 [exp]	20.4	0.8091
AT2G17080			Arabidopsis protein of unknown...		Lus10023965 [exp]	22.4	0.8980
AT2G02310		ATPP2-B6	phloem protein 2-B6 (.1)		Lus10003445 [exp]	27.0	0.8690
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	27.1	0.7834

Compare expression of checked genes

Lus10003191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.