Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10925 186 / 6e-60 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) AT4G23960 71 / 4e-16 F-box family protein (.1) AT4G23970 51 / 7e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001815 [exp] 255 / 2e-87 AT4G10925 317 / 4e-111 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10023064 [exp] 217 / 1e-71 AT4G10925 333 / 5e-116 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10032407 [exp] 211 / 3e-69 AT4G10925 338 / 2e-118 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Lus10021504 [exp] 39 / 0.0007 AT3G09250 272 / 2e-92 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141600 [exp] 191 / 3e-61 AT4G10925 350 / 9e-123 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3) Potri.001G089600 [exp] 189 / 3e-60 AT4G10925 347 / 2e-121 Nuclear transport factor 2 (NTF2) family protein (.1), Nuclear transport factor 2 (NTF2) family protein (.2), Nuclear transport factor 2 (NTF2) family protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003192 pacid=23155751 polypeptide=Lus10003192 locus=Lus10003192.g ID=Lus10003192.BGIv1.0 annot-version=v1.0 ATGACCTCGGTGGAGAGGCAGTGTGGGGCGTCAATGATGGAGCAGCTGGTTCCTGAGATAACGACGCATGCGTTGAGTTATTTGGATTACCCGAGTCTCT GCCGATTGTCCATGAGTAACTCATTGATGCGTGAGGCTGCAAATGACGATAATGCATGGAAAGCTCTGTATCACAAGATCTTTGGACCTAGAGATTGCAT ATCATCAAAGATTGGTGAAATTGAAAAGGAGGTTGATGAGATAAGATCAGCAGCAAAGTACAATGCTGTTATACAGAGTTTTCAGCTGGCTTTCAATTGG GCGGAAGGAGGAGTGCACTTTCAGGTACAAGATGTGCGGGTTCGGATTGGCATGGCCTGGGTAACTATGAAAAACTATCTAGACGTGGACGCCGGACCCT TCCATGTAACTAACGTGTTTGAGTTCGTGAATGGGAGGTGGTACATGGTGCATCATCACAGTTCAGCGGACCAGCAGGCGCTGATGCCACCGTAA
AA sequence Show only first row Show all	>Lus10003192 pacid=23155751 polypeptide=Lus10003192 locus=Lus10003192.g ID=Lus10003192.BGIv1.0 annot-version=v1.0 MTSVERQCGASMMEQLVPEITTHALSYLDYPSLCRLSMSNSLMREAANDDNAWKALYHKIFGPRDCISSKIGEIEKEVDEIRSAAKYNAVIQSFQLAFNW AEGGVHFQVQDVRVRIGMAWVTMKNYLDVDAGPFHVTNVFEFVNGRWYMVHHHSSADQQALMPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10925			Nuclear transport factor 2 (NT...		Lus10003192 [exp]	0	1
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	15.4	0.8160
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006352 [exp]	15.9	0.7658
AT4G32480			Protein of unknown function (D...		Lus10039838 [exp]	17.7	0.8056
					Lus10025505 [exp]	19.2	0.8122
					Lus10003616 [exp]	19.3	0.7756
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	47.3	0.7045
					Lus10027034 [exp]	60.4	0.7570
					Lus10018095 [exp]	61.5	0.7654
AT4G31680	B3	REM8	Transcriptional factor B3 fami...		Lus10010080 [exp]	65.5	0.7373
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	66.6	0.7598

Compare expression of checked genes

Lus10003192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.