Plant FIBer expression Database

Lus10003193 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61920 66 / 9e-14 unknown protein
AT4G10910 51 / 1e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032411
[exp]
147 / 5e-45 AT3G61920 73 / 4e-16 unknown protein
Lus10023060
[exp]
142 / 6e-43 AT3G61920 73 / 4e-16 unknown protein
Lus10008274
[exp]
39 / 0.0006 AT1G64700 118 / 9e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G089000
[exp]
106 / 5e-29 AT3G61920 81 / 5e-19 unknown protein
Potri.002G178900
[exp]
58 / 2e-10 AT3G61920 142 / 6e-43 unknown protein
Potri.014G104900
[exp]
50 / 6e-08 AT3G61920 130 / 4e-38 unknown protein
Potri.001G448500
[exp]
43 / 4e-05 AT1G64700 154 / 3e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10003193 pacid=23155745 polypeptide=Lus10003193 locus=Lus10003193.g ID=Lus10003193.BGIv1.0 annot-version=v1.0
ATGGGAAACTGCAGTCCTAAAGGAACCTCCACCGCCGGGGACGATAATTCAAATCCGGTCGTAATTAGGACTCATTCCGGCGACATAGTAGAGTTCAAGG
CTCCTATTTTGGCTAAAGATGTTAACTTCCATCACTACCCTGGCTTCCAAGTTTGCATTCAGGGCTCATCTACGCCTGTTCCCGACTCAGAGTACTTGAT
CGCCGGCAAGTTCTATCATCTTCTTCCAGCTGAGTCATCATCAGCGGCGGTGATGCATGTTCTGCCGTCGAACAGGGAGGGGGTTTGGAAGGTGAAGCTG
GTGATCGATCCCAAGAGGCTGGAGGAGATATGGTCTGACGCGGAGAGTGTGGAGGCGTTGATTGATAAGATGAGAATCGCCGCTGCTGCTGCCTCCACCG
GCGGCGGAGAGAGTTTGAATACGCCGCGGCGGAGCGGTCGTGCTTGGGGGATGATGATGATGAATAGGAATAAGGAGGGGGCTGCTGATATTTCTCACAT
GATCGAGCTTCCTAACTGA
AA sequence
>Lus10003193 pacid=23155745 polypeptide=Lus10003193 locus=Lus10003193.g ID=Lus10003193.BGIv1.0 annot-version=v1.0
MGNCSPKGTSTAGDDNSNPVVIRTHSGDIVEFKAPILAKDVNFHHYPGFQVCIQGSSTPVPDSEYLIAGKFYHLLPAESSSAAVMHVLPSNREGVWKVKL
VIDPKRLEEIWSDAESVEALIDKMRIAAAAASTGGGESLNTPRRSGRAWGMMMMNRNKEGAADISHMIELPN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61920 unknown protein Lus10003193
[exp]
0 1
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Lus10008189
[exp]
10.6 0.9139
AT2G38640 Protein of unknown function (D... Lus10007423
[exp]
14.3 0.9036
Lus10011653
[exp]
31.4 0.9046
AT2G42430 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, la... Lus10033872
[exp]
33.5 0.8766
Lus10032742
[exp]
38.2 0.9025
AT3G51660 Tautomerase/MIF superfamily pr... Lus10000344
[exp]
38.6 0.8989
AT3G14880 unknown protein Lus10042453
[exp]
48.2 0.9016
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Lus10019800
[exp]
48.7 0.8883
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Lus10007530
[exp]
72.5 0.8918
AT2G03220 ATFUT1, ATFT1, ... MURUS 2, ARABIDOPSIS THALIANA ... Lus10041642
[exp]
80.0 0.8810

Lus10003193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.